PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Seita.9G413200.1.p
Common NameLOC101759724, SETIT_036565mg
Organism
Setaria italica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
Family WRKY
Protein Properties Length: 331aa    MW: 33977.3 Da    PI: 6.3516
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Seita.9G413200.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY80.81.5e-25124184259
                         --SS-EEEEEEE--TT-SS-EEEEEE-ST...T---EEEEEE-SSSTTEEEEEEES--SS- CS
                WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa...gCpvkkkversaedpkvveitYegeHnhe 59 
                         +Dg+ WrKYGqKe+++s +prsYYrCt++   gC++k++v+ ++ dp+ +++tY g+H+++
  Seita.9G413200.1.p 124 EDGHVWRKYGQKEIQNSSYPRSYYRCTHRsdqGCNAKRQVQVCEADPSKFVVTYYGDHTCR 184
                         8***************************99999*************************996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.806.8E-27117186IPR003657WRKY domain
PROSITE profilePS5081122.986118186IPR003657WRKY domain
SuperFamilySSF1182908.37E-25121186IPR003657WRKY domain
SMARTSM007741.3E-34123185IPR003657WRKY domain
PfamPF031062.1E-24124184IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 331 aa     Download sequence    Send to blast
MASSLGRDVP AERTAAVAND LVEARDGAAT LRVFLLQLDD HRAPWAQRVV DGVLDRLSSA  60
MSALDDVSDA AAGRRSPAAG GSGSGGAARP QQSVSSSGNT RKRSFVSRSR SQRPSDKKIT  120
ATLEDGHVWR KYGQKEIQNS SYPRSYYRCT HRSDQGCNAK RQVQVCEADP SKFVVTYYGD  180
HTCRDPSTIP LVVPAAGAAP DCANNLINFG TSGTNNNAAA STTGASSSQY LAMGGSAADQ  240
LSTSWCASDD VFSSSAGSFM QVDELIGAVV GSAGVTSTAT VGSSALDRGG HGGMGMAGGG  300
GGTASFPPSP NGLGSFVVGS YDDDLFPMDP *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6ir8_A9e-27119184469OsWRKY45
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapSeita.9G413200.1.p
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004984467.10.0probable WRKY transcription factor 70 isoform X1
TrEMBLK4ACF80.0K4ACF8_SETIT; Uncharacterized protein
STRINGSi036565m0.0(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP139812526
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G56400.11e-24WRKY DNA-binding protein 70