PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Seita.9G391800.1.p

Organism

Setaria italica

Taxonomic ID

4555

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria

Family

GeBP

Protein Properties

Length: 377aa MW: 41331.5 Da PI: 9.8715

Description

GeBP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Seita.9G391800.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF573	103.3	2e-32	70	169	2	97
DUF573 2 lfqrlwseeDeivlLqGlidfkaktgk..spsd.didafyefvkksisfkvsksqlveKirrLKkKfkkkvkk.aksgkepsfskehdqki 88 lfqrlw++eDeiv+L+++ +f+a++g+ +++ d++ fye ++++++ ++k+qlveKirrLK+K++++v++ + g ++f+++h+q i Seita.9G391800.1.p 70 LFQRLWTDEDEIVILRAFAEFTAQRGTsfASHQyDTTPFYEDMRRRLHTGFTKNQLVEKIRRLKRKYRNCVERlRVAGAGFTFRSPHEQAI 160 79***********************8867778***********************************88899********* PP DUF573 89 felskkiWg 97 fe+++ iW+ Seita.9G391800.1.p 161 FEIARTIWR 169 ******8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF04504	4.5E-30	71	168	IPR007592	Protein of unknown function DUF573

Sequence ? help Back to Top
Protein Sequence Length: 377 aa Download sequence Send to blast
MFPTVDDPSA AGAMVSSSFP DADAYGNGDS DDLDFPVDPH PTPVFSSPPA APASAATAAA 60 PASAGERRPL FQRLWTDEDE IVILRAFAEF TAQRGTSFAS HQYDTTPFYE DMRRRLHTGF 120 TKNQLVEKIR RLKRKYRNCV ERLRVAGAGF TFRSPHEQAI FEIARTIWRP DSDKHGRDSD 180 DEGGASGANA HDGPLAIIDA VAPNGESTKS PTSRPRRGRR RRTGDFPADA AAETLALPQP 240 PMPLWPRTRS RPSPRPGCLP WTAASAWAAS AWTPRCRPRY PRPRRQRPTV ENPILAALFK 300 EMVRAMLSIG GGGGAAPMGL EPPPAIAGLP MEGEKWRQQR IRELEVYLRR IDLLQDQARA 360 ALEELRSAPH AGGMNS*

Sequence ? help Back to Top

Protein Sequence Length: 377 aa Download sequence Send to blast

MFPTVDDPSA AGAMVSSSFP DADAYGNGDS DDLDFPVDPH PTPVFSSPPA APASAATAAA  60
PASAGERRPL FQRLWTDEDE IVILRAFAEF TAQRGTSFAS HQYDTTPFYE DMRRRLHTGF  120
TKNQLVEKIR RLKRKYRNCV ERLRVAGAGF TFRSPHEQAI FEIARTIWRP DSDKHGRDSD  180
DEGGASGANA HDGPLAIIDA VAPNGESTKS PTSRPRRGRR RRTGDFPADA AAETLALPQP  240
PMPLWPRTRS RPSPRPGCLP WTAASAWAAS AWTPRCRPRY PRPRRQRPTV ENPILAALFK  300
EMVRAMLSIG GGGGAAPMGL EPPPAIAGLP MEGEKWRQQR IRELEVYLRR IDLLQDQARA  360
ALEELRSAPH AGGMNS*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Seita.9G391800.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	BT064599	0.0	BT064599.1 Zea mays full-length cDNA clone ZM_BFc0188M08 mRNA, complete cds.
GenBank	EU972116	0.0	EU972116.1 Zea mays clone 375368 hypothetical protein mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025794014.1	0.0	probable transcription factor At3g04930
TrEMBL	A0A368SQE6	0.0	A0A368SQE6_SETIT; Uncharacterized protein
STRING	GRMZM2G030458_P01	1e-167	(Zea mays)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP974	37	123

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G04930.2	8e-32	DNA-binding storekeeper protein-related transcriptional regulator

Link Out ? help Back to Top
Phytozome	Seita.9G391800.1.p