PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Seita.9G355300.1.p
Organism
Setaria italica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
Family GRAS
Protein Properties Length: 636aa    MW: 67601.1 Da    PI: 6.3806
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Seita.9G355300.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS3121.4e-952236342374
                GRAS   2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalkl.fsevsPil 91 
                          +lLl+cA+av+++d +++q+l++ l+elasp+gd  q+la+yf+++L arl+ s++++ ++l++ ++++ +s e++  + l f+e+sP+ 
  Seita.9G355300.1.p 223 AQLLLQCARAVAARDSQRVQQLMWMLNELASPYGDVDQKLASYFLQGLFARLTTSGPRTLRTLAAASDRN-TSFESTRRTALrFQELSPWA 312
                         589************************************************************9888874.444444444446******** PP

                GRAS  92 kfshltaNqaIleavege................ervHiiDfdisqGlQWpaLlqaLasRp.egppslRiTgvgspesg....skeeleet 161
                          f+h++aN aIlea+ ++                 r+Hi+D++ + ++QWp+Ll+aLa+R+ +++p+l iT+v+++++      ++ ++e+
  Seita.9G355300.1.p 313 SFGHVAANGAILEAFLEAaaaaasssssssssqpPRLHILDLSNTFCTQWPTLLEALATRSsDDTPHLSITTVVPAAAPssaaAQRVMREI 403
                         **************97766666677777777777789************************8889********99766577889999**** PP

                GRAS 162 gerLakfAeelgvpfefnvlvak.rledleleeLrvkp.gEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhns 250
                         ++rL+kfA+ +gvpf+f+++++  +l++l+l+ L +++ g ala+n+v +l  +   ++  ++ rd++L  +++l+P+vv+vve++ad+ +
  Seita.9G355300.1.p 404 AQRLEKFARLMGVPFSFRAVHHAgDLAELDLDGLGLREgGAALAINCVNALRGVA--PGGARQ-RDAFLASLRRLEPRVVTVVEEDADLVE 491
                         *******************97767**************999*************8..666666.9**********************9976 PP

                GRAS 251 e...............sFlerflealeyysalfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkp 326
                         +                F + f+e l+++sa +dsle+++p++s+er ++Er+  gr+iv++v+c  +e+ er+et ++W +r+++aGF+p
  Seita.9G355300.1.p 492 PdpdassseeaasteaAFIKVFTEGLRFFSAYMDSLEESFPKTSNERLVLERA-AGRAIVDLVSCPASESAERRETGASWARRMRSAGFSP 581
                         66899999*******9*************************************.************************************* PP

                GRAS 327 vplsekaakqaklllrkvksdgyrveee......sgslvlgWkdrpLvsvSaWr 374
                         v++s+++a+++++llr++  +g+++ e        + ++l Wk++p+v++SaWr
  Seita.9G355300.1.p 582 VAFSDDVADDMRSLLRRYR-EGWSLREPgtddgaAAGVFLAWKEQPVVWTSAWR 634
                         ******************9.99***97766666566778**************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098551.743196609IPR005202Transcription factor GRAS
PfamPF035144.7E-93223634IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0008356Biological Processasymmetric cell division
GO:0009956Biological Processradial pattern formation
GO:0045930Biological Processnegative regulation of mitotic cell cycle
GO:0048366Biological Processleaf development
GO:0055072Biological Processiron ion homeostasis
GO:0005634Cellular Componentnucleus
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 636 aa     Download sequence    Send to blast
MDTLFRLVSL HQHHHHPQAQ APASSSPDQQ QHHHQSPYSS RSTSRSTTST GSRSSPSHHT  60
HNNHYYSHSH SHYNSSNSSG SYYYCDPAGG GGGGGGGGGY YYDHQPAAPA PYQEECGNDH  120
GFYMDEDFSS SSSSRHYHHQ SSRAPPAAPS SSPPAPAPPT QPPSTSSGAG GHGGGLFEAA  180
DFSFPQVDID LDFSSPATSS GAGGGGGTAA SSSGGGGAGR WAAQLLLQCA RAVAARDSQR  240
VQQLMWMLNE LASPYGDVDQ KLASYFLQGL FARLTTSGPR TLRTLAAASD RNTSFESTRR  300
TALRFQELSP WASFGHVAAN GAILEAFLEA AAAAASSSSS SSSSQPPRLH ILDLSNTFCT  360
QWPTLLEALA TRSSDDTPHL SITTVVPAAA PSSAAAQRVM REIAQRLEKF ARLMGVPFSF  420
RAVHHAGDLA ELDLDGLGLR EGGAALAINC VNALRGVAPG GARQRDAFLA SLRRLEPRVV  480
TVVEEDADLV EPDPDASSSE EAASTEAAFI KVFTEGLRFF SAYMDSLEES FPKTSNERLV  540
LERAAGRAIV DLVSCPASES AERRETGASW ARRMRSAGFS PVAFSDDVAD DMRSLLRRYR  600
EGWSLREPGT DDGAAAGVFL AWKEQPVVWT SAWRP*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_B1e-15818263515420Protein SHORT-ROOT
5b3h_E1e-15818263515420Protein SHORT-ROOT
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor required for the asymmetric cell division involved in radial pattern formation in roots. Essential for both cell division and cell specification. {ECO:0000269|PubMed:17446396}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapSeita.9G355300.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKJ7270150.0KJ727015.1 Zea mays clone pUT3996 GRAS transcription factor (GRAS58) gene, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004983931.10.0protein SHORT-ROOT 2
SwissprotQ8H2X80.0SHR1_ORYSJ; Protein SHORT-ROOT 1
TrEMBLA0A368SP550.0A0A368SP55_SETIT; Uncharacterized protein
STRINGSi034653m0.0(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP35263781
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37650.11e-139GRAS family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]