PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Seita.9G350800.1.p | ||||||||
Common Name | SETIT_039493mg | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
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Family | ERF | ||||||||
Protein Properties | Length: 158aa MW: 17407.8 Da PI: 9.4276 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 37.4 | 6.3e-12 | 31 | 79 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 s+ykGV + +grW A+I++ r +r +lg+f + +Aa+a++ a+++++g Seita.9G350800.1.p 31 SRYKGVVPQP-NGRWGAQIYE------RhARAWLGTFADEAMAARAYDVAALRFRG 79 79****9888.8*********......44**********99*************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF54171 | 3.6E-15 | 31 | 87 | IPR016177 | DNA-binding domain |
Pfam | PF00847 | 2.6E-7 | 31 | 79 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 7.51E-20 | 31 | 86 | No hit | No description |
Gene3D | G3DSA:3.30.730.10 | 6.8E-18 | 32 | 86 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 4.6E-18 | 32 | 93 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 19.282 | 32 | 87 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:2.40.330.10 | 1.0E-4 | 119 | 157 | IPR015300 | DNA-binding pseudobarrel domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 158 aa Download sequence Send to blast |
MSTSTQEVEQ MDWMDGDGDA VAASPRARTS SRYKGVVPQP NGRWGAQIYE RHARAWLGTF 60 ADEAMAARAY DVAALRFRGR GRAVNFLGSP AGMAKIAFLA VQPKAEMVPR VALFEKALQA 120 EKHFPPLDEA APPVLLVFED VAGGKVWRFW YLYWSSS* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Seita.9G350800.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | FP098298 | 5e-37 | FP098298.1 Phyllostachys edulis cDNA clone: bphyem207d01, full insert sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004986867.1 | 3e-79 | AP2/ERF and B3 domain-containing protein Os01g0141000 | ||||
Swissprot | Q9LS06 | 2e-34 | RAVL4_ARATH; AP2/ERF and B3 domain-containing transcription factor ARF14 | ||||
TrEMBL | K4AKR8 | 1e-110 | K4AKR8_SETIT; Uncharacterized protein | ||||
STRING | Si039493m | 1e-111 | (Setaria italica) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP456 | 38 | 203 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G25730.1 | 1e-36 | ethylene response DNA binding factor 3 |
Link Out ? help Back to Top | |
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Phytozome | Seita.9G350800.1.p |