PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Seita.9G310400.1.p | ||||||||
Common Name | SETIT_039973mg | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
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Family | bHLH | ||||||||
Protein Properties | Length: 697aa MW: 74216.1 Da PI: 6.6335 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 39.1 | 1.4e-12 | 518 | 563 | 4 | 54 |
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 +h e+Er+RR+++N++f Lr ++P+ K++Ka+ L A+ YI++L Seita.9G310400.1.p 518 NHVEAERQRREKLNQRFYALRAVVPNV-----SKMDKASLLGDAISYINEL 563 799***********************6.....5***************998 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF14215 | 1.6E-53 | 59 | 239 | IPR025610 | Transcription factor MYC/MYB N-terminal |
PROSITE profile | PS50888 | 17.39 | 514 | 563 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 1.83E-18 | 517 | 585 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 2.97E-14 | 517 | 567 | No hit | No description |
Pfam | PF00010 | 4.6E-10 | 518 | 563 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 1.4E-18 | 518 | 585 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 3.6E-16 | 520 | 569 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009269 | Biological Process | response to desiccation | ||||
GO:0009611 | Biological Process | response to wounding | ||||
GO:0009737 | Biological Process | response to abscisic acid | ||||
GO:0009867 | Biological Process | jasmonic acid mediated signaling pathway | ||||
GO:0009963 | Biological Process | positive regulation of flavonoid biosynthetic process | ||||
GO:0010200 | Biological Process | response to chitin | ||||
GO:0043619 | Biological Process | regulation of transcription from RNA polymerase II promoter in response to oxidative stress | ||||
GO:0045893 | Biological Process | positive regulation of transcription, DNA-templated | ||||
GO:0051090 | Biological Process | regulation of sequence-specific DNA binding transcription factor activity | ||||
GO:2000068 | Biological Process | regulation of defense response to insect | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 697 aa Download sequence Send to blast |
MNLWTDDNAS MMEAFMASAD LPAFPWGAPA GGGASSAAAT PPPPQMPAAM APGFNQDTLQ 60 QRLQAMIEGS RETWTYAIFW QSSVDAATGA SLLGWGDGYY KGCDEDKRKQ KPLTPAAQAE 120 QEHRKRVLRE LNSLISGAAA APDEAVEEEV TDTEWFFLVS MTQSFLNGSG LPGQALFAGQ 180 PTWIASGLSS APCERARQAY NFGLRTMVCV PVGTGVLELG STDVVFQTAE SMAKIRSLFG 240 GGGGAGGGSW PPVQPPAPPP QQPAAGADQA ETDPSVLWLA DAPVMDIKES LSHPSAEISV 300 SKPPPPPQIH FENGSSSTLT ENPSPSVHAP PPPPAPAAAP PQRQHQHNQA HQGPFRRELN 360 FSEFASNPSM AAAPPFFKPD PVGHEHPSPA PPAATASLTT APGSLFSQHT ATLTAAPAND 420 TKNNNNKRSM EATSRASNTN HHPAATANEG MLSFSSAPTT RPSTGTGAPA KSESDHSDLD 480 ASVREVESSR VVAPPPEAEK RPRKRGRKPA NGREEPLNHV EAERQRREKL NQRFYALRAV 540 VPNVSKMDKA SLLGDAISYI NELRGKLTSL ESDKDTLHAQ IEALKKERDA RPAPHAAGLG 600 GHDAGPRCHA VEIDAKILGL EAMIRVQCHK RNHPSARLMT ALRELDLDVY HASVSVVKDL 660 MIQQVAVKMA SRVYSQEQLN AALYSRLAEP GTAMGR* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4rqw_A | 1e-63 | 52 | 239 | 2 | 192 | Transcription factor MYC3 |
4rqw_B | 1e-63 | 52 | 239 | 2 | 192 | Transcription factor MYC3 |
4rs9_A | 1e-63 | 52 | 239 | 2 | 192 | Transcription factor MYC3 |
4yz6_A | 1e-63 | 52 | 239 | 2 | 192 | Transcription factor MYC3 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 499 | 507 | KRPRKRGRK |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional activator involved in jasmonate (JA) signaling pathway during spikelet development. Binds to the G2 region G-box (5'-CACGTG-3') of the MADS1 promoter and thus directly regulates the expression of MADS1. Its function in MADS1 activation is abolished by TIFY3/JAZ1 which directly target MYC2 during spikelet development. {ECO:0000269|PubMed:24647160}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00084 | PBM | Transfer from AT1G32640 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Seita.9G310400.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT085577 | 0.0 | BT085577.2 Zea mays full-length cDNA clone ZM_BFc0036D10 mRNA, complete cds. | |||
GenBank | BT086012 | 0.0 | BT086012.2 Zea mays full-length cDNA clone ZM_BFc0098F02 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_012698381.1 | 0.0 | LOW QUALITY PROTEIN: transcription factor MYC2-like | ||||
Swissprot | Q336P5 | 0.0 | MYC2_ORYSJ; Transcription factor MYC2 | ||||
TrEMBL | K4AM38 | 0.0 | K4AM38_SETIT; Uncharacterized protein | ||||
STRING | Si039973m | 0.0 | (Setaria italica) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP4452 | 31 | 57 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G32640.1 | 1e-138 | bHLH family protein |
Link Out ? help Back to Top | |
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Phytozome | Seita.9G310400.1.p |
Publications ? help Back to Top | |||
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