PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Seita.9G300800.1.p

Common Name

SETIT_036673mg

Organism

Setaria italica

Taxonomic ID

4555

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria

Family

bHLH

Protein Properties

Length: 306aa MW: 33088.3 Da PI: 6.6154

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Seita.9G300800.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	36	1.3e-11	151	197	4	55
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 h ++Er+RR+++ + f++L +++P +K +K+++L ++eY+++L+ Seita.9G300800.1.p 151 EHVIAERKRREKMHHQFATLASIIPDI-----TKTDKVSVLGSTIEYLHHLR 197 5999********************7.....7***************95 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50888	14.608	147	196	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	1.8E-14	151	209	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	3.1E-9	151	196	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	2.88E-15	152	217	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	4.02E-12	152	201	No hit	No description
SMART	SM00353	1.6E-13	153	202	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 306 aa Download sequence Send to blast
MDSSASQWLA ELENDDLGGL EFIDPLSMQQ LAESLANELW NEPRAPQEQQ QEQNYQPQQC 60 TPPPKGFAFV GDLNLNTANG RCPTPVVSAG GIDNMFSFTA GGLSAPLNFT AQEETGQAES 120 VATGSTVGKC CSSSTTEKKS GGRKPSSSVK EHVIAERKRR EKMHHQFATL ASIIPDITKT 180 DKVSVLGSTI EYLHHLRNRL RTLQEQQHQQ GSSTAESPTT LNARRCCIAS EGDGAASPKI 240 EADVQGTTVL LRVVCRKKKG VLIMVLTELE KHRLSIINTN VVPFAKSSLN ITITAQVNCS 300 LCPEL*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	155	160	ERKRRE
2	156	161	RKRREK

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Seita.9G300800.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_022685471.1	0.0	transcription factor bHLH19-like
TrEMBL	A0A368SM72	0.0	A0A368SM72_SETIT; Uncharacterized protein
STRING	Si036673m	0.0	(Setaria italica)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP13896	17	25

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G22760.1	1e-28	bHLH family protein

Link Out ? help Back to Top
Phytozome	Seita.9G300800.1.p