PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Seita.9G300700.1.p
Organism
Setaria italica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
Family bHLH
Protein Properties Length: 304aa    MW: 33629.7 Da    PI: 5.426
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Seita.9G300700.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH331e-10138183555
                         HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                 HLH   5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                         h + Er+RR+++   f++L +++P       +K +K++ L  A++Y+++L+
  Seita.9G300700.1.p 138 HVISERKRREKMHLQFATLASIIPDV-----TKTDKVSLLGSAIDYVHHLR 183
                         8899*********************8.....8*****************95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088814.094133182IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.8E-14137196IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474592.49E-14138197IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000103.4E-8138182IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000839.81E-10138187No hitNo description
SMARTSM003533.5E-12139188IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS516719.667234303IPR002912ACT domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008152Biological Processmetabolic process
GO:0016597Molecular Functionamino acid binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 304 aa     Download sequence    Send to blast
MNSSLDHQWL EELENEDLRE LDFIDPLSIH QLAESMANEL WEQPSQEQQV ELDQRQQRSY  60
PAAFSVLGDD INKSYPKGFP TAITAGGGDD SMFSFVDGNS KQLSFSAREH KQEGNTSSLT  120
MTKETKGGRR ASSSVPEHVI SERKRREKMH LQFATLASII PDVTKTDKVS LLGSAIDYVH  180
HLRGRLKALQ EEHHRSTGST AESPPLDARC CIGFEDDGEA SPKIEADVRG RTVMLRVVCR  240
EKKGVLIMVL KELEKHGLTI INTNVLPLSE SSSLNITVTA QIEDGSSTAV DLVNNLNSAL  300
KKF*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1141146ERKRRE
2142147RKRREK
Cis-element ? help Back to Top
SourceLink
PlantRegMapSeita.9G300700.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_022685341.10.0transcription factor bHLH19-like
RefseqXP_022685342.10.0transcription factor bHLH19-like
TrEMBLA0A368SME00.0A0A368SME0_SETIT; Uncharacterized protein
STRINGSi039393m0.0(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP138961725
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G22760.11e-27bHLH family protein