PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Seita.9G219700.2.p
Common NameLOC101784968, SETIT_034254mg
Organism
Setaria italica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
Family HD-ZIP
Protein Properties Length: 840aa    MW: 91968.7 Da    PI: 6.1135
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Seita.9G219700.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox58.61e-182986457
                        -SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS
            Homeobox  4 RttftkeqleeLeelFeknrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57
                          ++t+eq+e+Le++++++++ps ++r++L +++    +++ +q+kvWFqNrR ++k+
  Seita.9G219700.2.p 29 YVRYTQEQVEALERVYAECPKPSSSRRQQLLRECpilsNIEPKQIKVWFQNRRCRDKQ 86
                        6789***************************************************996 PP
2START159.62.5e-501653722204
                         HHHHHHHHHHHHHHHC-TT-EEEEEXCCTTEEEEEEESSS.SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-SEEEEEEEECTT..EE CS
               START   2 laeeaaqelvkkalaeepgWvkssesengdevlqkfeeskvdsgealrasgvvdmvlallveellddkeqWdetlakaetlevissg..ga 90 
                         +aee+++e+++ka+ ++  Wv+++ +++g+++  +++ s++++g a+ra+g+v  ++++ ve+l d++  W +++++ e+  v+  g  g+
  Seita.9G219700.2.p 165 IAEETLTEFLSKATGTAIDWVQMPGMKPGPDSFGIVTVSHGCRGVAARACGLVNLEPTKIVEILKDRP-SWFRDCRSLEVFTVLPAGngGT 254
                         789*******************************************************9999999999.****************9999** PP

                         EEEEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--....-TTSEE-EESSEEEEEEEECTCEEEEEEEE-EE--SSXX CS
               START  91 lqlmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppe...sssvvRaellpSgiliepksnghskvtwvehvdlkgrlp 177
                         ++l +++++a+++lvp Rdf+++Ry+ +l++g++v++++S++     ++    +++vRae+lpSg+l++++++g+s v +v+h dl+++++
  Seita.9G219700.2.p 255 IELVYMQMYAPTTLVPaRDFWTLRYTTTLEDGSLVVCERSLSGSGGGQStatAQQFVRAEMLPSGYLVRQCEGGGSIVRIVDHLDLDAWSV 345
                         ******************************************987777667799************************************* PP

                         HHHHHHHHHHHHHHHHHHHHHHTXXXX CS
               START 178 hwllrslvksglaegaktwvatlqrqc 204
                         +++lr+l++s+++ ++k+++a+l++ +
  Seita.9G219700.2.p 346 PEVLRPLYESSRVVAQKMTTAALRHIR 372
                         ***********************9865 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.602.1E-181186IPR009057Homeodomain-like
PROSITE profilePS5007115.6452387IPR001356Homeobox domain
SMARTSM003897.0E-162591IPR001356Homeobox domain
CDDcd000861.36E-162888No hitNo description
SuperFamilySSF466894.71E-162889IPR009057Homeodomain-like
PfamPF000462.6E-162986IPR001356Homeobox domain
CDDcd146864.99E-680119No hitNo description
PROSITE profilePS5084826.858155383IPR002913START domain
CDDcd088751.06E-70159375No hitNo description
Gene3DG3DSA:3.30.530.204.6E-20164350IPR023393START-like domain
SuperFamilySSF559616.32E-35164376No hitNo description
SMARTSM002341.4E-38164374IPR002913START domain
PfamPF018524.2E-48165372IPR002913START domain
PfamPF086704.5E-49696838IPR013978MEKHLA
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0008289Molecular Functionlipid binding
Sequence ? help Back to Top
Protein Sequence    Length: 840 aa     Download sequence    Send to blast
MAAAVAMRSG SSDGGGGGYD KGGMDTGKYV RYTQEQVEAL ERVYAECPKP SSSRRQQLLR  60
ECPILSNIEP KQIKVWFQNR RCRDKQRKES SRLQAVNRKL TAMNKLLMEE NERLQKQVSQ  120
LVHENAYMKQ QLQNPSLAND VSCESNVTTP ANLRDASNPS GLLSIAEETL TEFLSKATGT  180
AIDWVQMPGM KPGPDSFGIV TVSHGCRGVA ARACGLVNLE PTKIVEILKD RPSWFRDCRS  240
LEVFTVLPAG NGGTIELVYM QMYAPTTLVP ARDFWTLRYT TTLEDGSLVV CERSLSGSGG  300
GQSTATAQQF VRAEMLPSGY LVRQCEGGGS IVRIVDHLDL DAWSVPEVLR PLYESSRVVA  360
QKMTTAALRH IRQIAQETSG EVAYALGRQP AVLRTFSQRL SRGFNDAISG FNDDGWSVMG  420
GDGTEDVIIA CNSKKTRNSS NPASAFGAPG GIICAKASML LQSVPPAVLV RFLREHRSEW  480
ADYNFDAYSA SALKTSPCSL PGLRSMRFSG SQIIMPLAHT VENEEILEVV RLEGQALTHD  540
DGLLSRDIHL LQLCTGIEEK SMGSCFQLVF APIDELFPDD APLISSGFRV IPLDIKSDGV  600
PSGRTLDLAS SLEVGTTTQH ASGDGSPDDC NLRSVLTIAF QFPYEIHLQD SVAAMARQYV  660
RSIVSAVQRV SMAISPSRSG LSTGQKIISG FPEAATLVRW ICKSYQYHLG VDLVSHSDEA  720
GESLLRMFWD HQDAVLCCSF KEKPVFTFGN QMGIDMLETT LIALQDLTLD KIFDEAGRKA  780
LHAEIPKLME QGYAYLPAGV CLSGMGRHVS YEQAIAWKVL GEDSNVHCLA FCFVNWSFV*
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapSeita.9G219700.2.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004982838.10.0homeobox-leucine zipper protein HOX9
SwissprotA2Z8L40.0HOX9_ORYSI; Homeobox-leucine zipper protein HOX9
TrEMBLK4A5V00.0K4A5V0_SETIT; Uncharacterized protein
STRINGSi034254m0.0(Setaria italica)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G60690.10.0HD-ZIP family protein