PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Seita.9G197300.1.p
Common NameLOC101783214, SETIT_036788mg
Organism
Setaria italica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
Family YABBY
Protein Properties Length: 304aa    MW: 32131.3 Da    PI: 8.5172
Description YABBY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Seita.9G197300.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1YABBY82.51.2e-254698557
               YABBY  5 ssseqvCyvqCnfCntilavsvPstslfkvvtvrCGhCtsllsvnlakasqll 57
                         +seq+Cyv+C fC+t+l+vsvP++slfk+vtvrCGhC+sll+vn++    + 
  Seita.9G197300.1.p 46 PASEQLCYVHCHFCDTVLVVSVPTSSLFKTVTVRCGHCSSLLTVNMRGLLFQG 98
                        689******************************************99877443 PP
2YABBY129.74e-40196262105170
               YABBY 105 edeevprvpp.virPPekrqrvPsaynrfikeeiqrikasnPdishreafsaaaknWahfPkihfgl 170
                         ++e +pr+ p v+rPPekrqrvPsaynrfik+eiqrika+nPdishreafsaaaknWahfP+ihfgl
  Seita.9G197300.1.p 196 TKEPSPRTNPvVNRPPEKRQRVPSAYNRFIKDEIQRIKAGNPDISHREAFSAAAKNWAHFPHIHFGL 262
                         567788888879*****************************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF046904.4E-6447262IPR006780YABBY protein
SuperFamilySSF470953.8E-8199255IPR009071High mobility group box domain
Gene3DG3DSA:1.10.30.103.6E-4211254IPR009071High mobility group box domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0007275Biological Processmulticellular organism development
Sequence ? help Back to Top
Protein Sequence    Length: 304 aa     Download sequence    Send to blast
MSSSSSSSSA ASASAVFPPS PQPPPPLLVE NLPPLHQLTP VAAAAPASEQ LCYVHCHFCD  60
TVLVVSVPTS SLFKTVTVRC GHCSSLLTVN MRGLLFQGTP TNTAAPPADV TSTTTTITTE  120
PPAAADASVN NGQFHFHHSL NLNPPHQQSL LDEISSSANP SLQLLEQHGL GGLIPSGRNA  180
AAPPPPHPPA AAAKGTKEPS PRTNPVVNRP PEKRQRVPSA YNRFIKDEIQ RIKAGNPDIS  240
HREAFSAAAK NWAHFPHIHF GLMPDHQGLK KTSLLPHQDH QRKDGLLKDG LYAAAANMGV  300
APY*
Cis-element ? help Back to Top
SourceLink
PlantRegMapSeita.9G197300.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKJ7279910.0KJ727991.1 Zea mays clone pUT6111 C2C2-YABBY transcription factor (YAB9) mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004982656.10.0protein YABBY 3
SwissprotQ8L5561e-102YAB3_ORYSJ; Protein YABBY 3
TrEMBLK4AD310.0K4AD31_SETIT; Uncharacterized protein
STRINGSi036788m0.0(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP144538121
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G45190.11e-46YABBY family protein
Publications ? help Back to Top
  1. Rice Chromosome 10 Sequencing Consortium
    In-depth view of structure, activity, and evolution of rice chromosome 10.
    Science, 2003. 300(5625): p. 1566-9
    [PMID:12791992]