PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Seita.9G167900.1.p
Common NameLOC101756093, SETIT_038695mg
Organism
Setaria italica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
Family bHLH
Protein Properties Length: 320aa    MW: 35116.1 Da    PI: 5.0682
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Seita.9G167900.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH32.51.5e-102452851055
                         HHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                 HLH  10 rrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                         r+RR+riN+++  L+ l+P+      +K++ +++Le+Av+Y+k Lq
  Seita.9G167900.1.p 245 RKRRERINERLRILQNLVPNG-----TKVDISTMLEEAVQYVKFLQ 285
                         9******************97.....8******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000837.95E-12233289No hitNo description
SuperFamilySSF474598.24E-15233301IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088815.415235284IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.103.5E-13235298IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003534.3E-11241290IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000107.4E-8245285IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 320 aa     Download sequence    Send to blast
MESGGVIAEA GWSSVDMPLP SHEEESAIME QLLGTFPSNC VEGDQGLPWL IQASNAFYSH  60
SNASSSTFSS TNSNSSGSLT FVVPSEYGGY CLSDSNEALD LNSCTAPMHL HMLQEQGAAQ  120
FMDTILNPPY GSGDSSCEDL EDSSMNLLDY VGNSDKRKHL EQGKLDGPTR SRKCARRSDS  180
KRVKKTMQRE GQDGSVAAAN GQSLSCCTFE NDSKAFPRPS VVVNPNSKAQ TDRRSATESQ  240
SLYARKRRER INERLRILQN LVPNGTKVDI STMLEEAVQY VKFLQLQIKL LSSDEMWMYA  300
PIAYNGMNIG IDLNLSQHR*
Cis-element ? help Back to Top
SourceLink
PlantRegMapSeita.9G167900.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004986376.10.0transcription factor bHLH139
TrEMBLK4AII30.0K4AII3_SETIT; Uncharacterized protein
STRINGSi038695m0.0(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP43103270
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G14760.16e-36bHLH family protein