PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Seita.9G167300.1.p
Organism
Setaria italica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
Family Dof
Protein Properties Length: 314aa    MW: 31372.3 Da    PI: 8.8405
Description Dof family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Seita.9G167300.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-Dof113.78.1e-3687142560
              zf-Dof   5 alkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkk 60 
                           +cprC s++tkfCyynny++sqPr+fC+aCrryWt GG+lrnvP+Gg++rk+ +
  Seita.9G167300.1.p  87 GEQCPRCASHDTKFCYYNNYNTSQPRHFCRACRRYWTLGGSLRNVPIGGSTRKRPR 142
                         579*************************************************9865 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF027013.6E-3188140IPR003851Zinc finger, Dof-type
PROSITE profilePS5088427.55988142IPR003851Zinc finger, Dof-type
ProDomPD0074782.0E-2289135IPR003851Zinc finger, Dof-type
PROSITE patternPS01361090126IPR003851Zinc finger, Dof-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 314 aa     Download sequence    Send to blast
MAGQVMEAHA HHQARLQPPA VPPFAPLPPS CKNDVHHFPA AMATPGSNAA AAADMAAYLQ  60
QLQDTAAAAA EANKSSSGGN GGGAARGEQC PRCASHDTKF CYYNNYNTSQ PRHFCRACRR  120
YWTLGGSLRN VPIGGSTRKR PRLAHHHHHH QQQPAAARRA PVFGLGLGGG GGAHPPMPSS  180
SSSQAGGLLG SLFALGAAAP LLDGPAAPML EGRGAGLFDL GLGLPVPGGA VGGAGDAGVQ  240
MQGLGLIRGG GGGHAGGASS GLFWPAGLLD SDSVDTWKML PGVGAGAMWP EFSAAAAPAP  300
QAGGLLHGGA QLM*
Cis-element ? help Back to Top
SourceLink
PlantRegMapSeita.9G167300.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKC5824068e-90KC582406.1 Sorghum bicolor dof9 protein (dof9) gene, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012698063.10.0dof zinc finger protein DOF1.6
TrEMBLA0A368SHC80.0A0A368SHC8_SETIT; Uncharacterized protein
STRINGGRMZM2G061292_P019e-92(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP14037367
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G51700.12e-24DOF zinc finger protein 1