PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Seita.9G166700.1.p
Common NameLOC101784700, SETIT_035046mg
Organism
Setaria italica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
Family B3
Protein Properties Length: 544aa    MW: 61869.4 Da    PI: 8.426
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Seita.9G166700.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B351.81.5e-16401201096
                         HHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEE CS
                  B3  10 vlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkv 96 
                         +++++ +++p++f++++  k   s t++le+++g  ++v++    + +++vl+ GW+ Fv+ang++e+Df++F+++++s+    v +
  Seita.9G166700.1.p  40 TSSKHSMIVPNRFLKHFARK--LSGTIKLESPDGSLYDVEV--AERFNKVVLRHGWEAFVDANGIEENDFLLFRHTEQSCV--EVLI 120
                         4566789*******666654..667****************..99999**************************8877666..4555 PP
2B341.72.1e-13251345497
                         E-..-HHHHT.T-EE--HHH.HTT---..--SEEEEEE.TTS-EEEEEE..EEETTE.EEE-TTHHHHHHHHT--TT-EEEEEE-SS.SEE CS
                  B3   4 vltpsdvlks.grlvlpkkfaeehggkkeesktltled.esgrsWevkliyrkksgr.yvltkGWkeFvkangLkegDfvvFkldgr.sef 90 
                         ++ +s+v    + l lpk++a++h     e++ +tl+   ++++W  k+ yr k+ r ++l++ W +Fv++n++++gD++++  ++  ++f
  Seita.9G166700.1.p 251 IMRKSHVKGPsAFLALPKEYASAHFPH--ETTNITLQRpGKSKKWHPKF-YRSKDIRlHMLRGQWLDFVRDNHVQVGDICLLLPTKGvRKF 338
                         55555555433789**********744..5567999995666*******.66666668************************987666888 PP

                         ..EEEEE CS
                  B3  91 elvvkvf 97 
                          ++v+++
  Seita.9G166700.1.p 339 AFTVHLL 345
                         8888876 PP
3B348.31.8e-154605381697
                         EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS.SEE..EEEEE CS
                  B3  16 lvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgr.sefelvvkvf 97 
                         l ++ ++a+++  + ++s   ++    g+sW+ ++ +r +s++++  +GW +Fv +ngL++gD+++F+l+++ s+ +++v+++
  Seita.9G166700.1.p 460 LEISARYAAANLPDRRQS---MILRYMGKSWRTQMVVRSGSRWFL-CEGWFQFVCDNGLRVGDVCLFELEKNeSKLTMTVHII 538
                         667788888884443443...4455699*******8888888775.55**********************9989999999986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.104.6E-2029126IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019365.69E-2129126IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086313.32431124IPR003340B3 DNA binding domain
CDDcd100175.69E-1833122No hitNo description
SMARTSM010192.7E-934124IPR003340B3 DNA binding domain
PfamPF023629.3E-1540118IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.102.0E-18241345IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019369.22E-19241346IPR015300DNA-binding pseudobarrel domain
SMARTSM010192.0E-4248348IPR003340B3 DNA binding domain
PfamPF023628.8E-12248345IPR003340B3 DNA binding domain
CDDcd100171.66E-18248343No hitNo description
PROSITE profilePS5086311.758249348IPR003340B3 DNA binding domain
SuperFamilySSF1019361.0E-19438538IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.106.3E-21438538IPR015300DNA-binding pseudobarrel domain
CDDcd100173.62E-19443536No hitNo description
SMARTSM010192.8E-9445541IPR003340B3 DNA binding domain
PROSITE profilePS5086312.449445541IPR003340B3 DNA binding domain
PfamPF023622.0E-13458538IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 544 aa     Download sequence    Send to blast
MARTRSGSRT KKSCDCCKRY MDHLDGKDQK MNYFLRRMTT SSKHSMIVPN RFLKHFARKL  60
SGTIKLESPD GSLYDVEVAE RFNKVVLRHG WEAFVDANGI EENDFLLFRH TEQSCVEVLI  120
LDSDGCEKVF PCTGIVNIPS FKERSVDSVD ISSSSHDETT ESSESERFTR CQKGSSYHRR  180
KTAKVTATSS SSKESGDIPS ESESYESDDL QTSPGDDYVL CSRSYLSEAQ EERVVALIRE  240
IQPKVTAFVA IMRKSHVKGP SAFLALPKEY ASAHFPHETT NITLQRPGKS KKWHPKFYRS  300
KDIRLHMLRG QWLDFVRDNH VQVGDICLLL PTKGVRKFAF TVHLLHTTGP HSRVRTSFQS  360
VSSCHGISSP KMASVVHIKE ETTDEEYVSS EGGMHGISNK YLEYKDPGGS FEPPYIISVR  420
SCLSESQKKI VEEKVRAIQC EVPIYVAIMN KCSVSIRYEL EISARYAAAN LPDRRQSMIL  480
RYMGKSWRTQ MVVRSGSRWF LCEGWFQFVC DNGLRVGDVC LFELEKNESK LTMTVHIIFS  540
EQL*
Cis-element ? help Back to Top
SourceLink
PlantRegMapSeita.9G166700.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004982415.10.0B3 domain-containing protein Os03g0619600
SwissprotQ6AV220.0Y3196_ORYSJ; B3 domain-containing protein Os03g0619600
TrEMBLK4A8400.0K4A840_SETIT; Uncharacterized protein
STRINGSi035046m0.0(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP58531172
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G33280.12e-13B3 family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]