PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Seita.9G166500.1.p
Common NameSETIT_038567mg
Organism
Setaria italica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
Family B3
Protein Properties Length: 334aa    MW: 38126.9 Da    PI: 10.1181
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Seita.9G166500.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B354.81.7e-17361181299
                         HTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE-S CS
                  B3  12 ksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfrk 99 
                          ++rlvlp k a ++ gk   s+ ++le++sg +++v++  + + gr  l++GW+ Fv+a++Lk  Df+vFk+dg s+  ++v +f++
  Seita.9G166500.1.p  36 FRKRLVLPDKLALHFRGK--ISRSIKLESRSGHTFDVQV-ANSNLGRLALQSGWELFVSAHDLKMLDFLVFKYDGISR--MKVLIFDA 118
                         4568********999877..6778***************.6888899*************************988544..59999986 PP
2B341.62.3e-132643323399
                         -SEEEEEETTS-EEEEEE....EEETTE.EEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE-S CS
                  B3  33 sktltledesgrsWevkliy..rkksgr.yvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfrk 99 
                         +++l+l++ +g+sW+v +++  r+++++   l kGW +F+ +n+L+ gD ++F+l ++++ +++v+++r+
  Seita.9G166500.1.p 264 ERKLMLRH-QGESWQVMCRVqvRRGPRKfQKLCKGWARFACDNNLQLGDLCLFELLKTKKYTMNVHIIRE 332
                         34577666.9********887777776668899***********************99*********986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.101.1E-1923121IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019363.14E-1924126IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086311.53325119IPR003340B3 DNA binding domain
CDDcd100171.19E-1828117No hitNo description
SMARTSM010191.6E-928119IPR003340B3 DNA binding domain
PfamPF023624.9E-1530118IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.101.7E-17228332IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019368.24E-16228331IPR015300DNA-binding pseudobarrel domain
CDDcd100171.05E-11231331No hitNo description
PROSITE profilePS5086311.194234333IPR003340B3 DNA binding domain
SMARTSM010190.0072237333IPR003340B3 DNA binding domain
PfamPF023621.2E-11250332IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 334 aa     Download sequence    Send to blast
MRKPGKECKV RDAYYFWNDY TDDQDKNFFK ILVGDFRKRL VLPDKLALHF RGKISRSIKL  60
ESRSGHTFDV QVANSNLGRL ALQSGWELFV SAHDLKMLDF LVFKYDGISR MKVLIFDASG  120
CEKVPPCFVT KNDINGTQSK EESIDVSSNY ANIPMKTPET KKKAGKQRDG SKIVNTGSSS  180
SSSESSGGST SSQEHEAHSV PSYIVPQRTN LTNVQKKKLK EKVGAICSEI PIYVCVMKKN  240
NISGRYQDMP FSGKYSDEYL PFKERKLMLR HQGESWQVMC RVQVRRGPRK FQKLCKGWAR  300
FACDNNLQLG DLCLFELLKT KKYTMNVHII REK*
Cis-element ? help Back to Top
SourceLink
PlantRegMapSeita.9G166500.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_022679254.10.0putative B3 domain-containing protein Os03g0621600 isoform X2
TrEMBLA0A368SHB80.0A0A368SHB8_SETIT; Uncharacterized protein
STRINGSi038567m0.0(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP29012985
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G33280.12e-25B3 family protein