PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Seita.9G163600.4.p
Common NameLOC101772130, SETIT_036408mg
Organism
Setaria italica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
Family WRKY
Protein Properties Length: 349aa    MW: 37474.2 Da    PI: 10.4402
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Seita.9G163600.4.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY98.44.5e-31282339359
                         -SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
                WRKY   3 DgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                         D+y+WrKYGqK++kgs++pr+YY+C+s  gCp++k+ver+ +d +++++tYegeHnh+
  Seita.9G163600.4.p 282 DEYSWRKYGQKPIKGSPHPRGYYKCSSVrGCPARKHVERCVDDSSMLIVTYEGEHNHT 339
                         9*************************988****************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF105331.4E-18233278IPR018872Zn-cluster domain
Gene3DG3DSA:2.20.25.809.7E-34268339IPR003657WRKY domain
PROSITE profilePS5081129.998275341IPR003657WRKY domain
SuperFamilySSF1182907.06E-27278339IPR003657WRKY domain
SMARTSM007741.6E-37280340IPR003657WRKY domain
PfamPF031068.2E-27282338IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0005516Molecular Functioncalmodulin binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 349 aa     Download sequence    Send to blast
MEEVEEANRA AVESCHRVLA LLSQPHDPAQ ARSIALGTDE ACAKFRKVVS LLSNGGGAGA  60
GGEAGPSGTS RSHPRAKVVS RRQNPGFLTQ KGFLDSNTPV VVLNSAHPSP SSAQVYPRTG  120
ALDAQSIHPL GGPPKLVQPL SAHFQFSNVS SRYQFPHQQQ QKLQAEMFKR SNSGINLKFD  180
STSGTGTMSS ARSFLSSLSM DGSVASLDGK SSSFHLIGGP AMSDPVNAQQ APRRRCTGRG  240
EDGTGKCAVT GRCHCSKRRK LRVKRSIKVP AISNKIADIP PDEYSWRKYG QKPIKGSPHP  300
RGYYKCSSVR GCPARKHVER CVDDSSMLIV TYEGEHNHTR MPTQSTQA*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ayd_A8e-21268342275WRKY transcription factor 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapSeita.9G163600.4.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012698494.10.0protein WRKY1 isoform X2
SwissprotQ93WU63e-96WRK74_ARATH; Probable WRKY transcription factor 74
TrEMBLA0A368SH780.0A0A368SH78_SETIT; Uncharacterized protein
STRINGSi036408m0.0(Setaria italica)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G28650.16e-81WRKY DNA-binding protein 74
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]