PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Seita.9G154300.3.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
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Family | YABBY | ||||||||
Protein Properties | Length: 153aa MW: 17296.7 Da PI: 8.9085 | ||||||||
Description | YABBY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | YABBY | 25.6 | 3.9e-08 | 5 | 27 | 2 | 24 |
YABBY 2 dvfssseqvCyvqCnfCntilav 24 +++ + e+vCyv+CnfCntila+ Seita.9G154300.3.p 5 QIVPALEHVCYVHCNFCNTILAL 27 567788***************85 PP | |||||||
2 | YABBY | 130.1 | 2.9e-40 | 29 | 126 | 72 | 170 |
YABBY 72 leelkveeenlk.snvekeesastsvssekl..senedeevprvppvirPPekrqrvPsaynrfikeeiqrikasnPdishreafsaaakn 159 +e+lkv++ +++ +n+ ++ +s++ ++ ++ ++ +++++ + +r PekrqrvPsaynrfikeei+rikasnP ishreafs+aakn Seita.9G154300.3.p 29 QENLKVHNFSFStENYCEYAPSSSKYRMPTMfsTKGDQDHMLH----VRAPEKRQRVPSAYNRFIKEEIRRIKASNPAISHREAFSTAAKN 115 6788888888751456667777777777666533344455554....89****************************************** PP YABBY 160 WahfPkihfgl 170 WahfP+ihfgl Seita.9G154300.3.p 116 WAHFPNIHFGL 126 *********97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF04690 | 1.1E-37 | 51 | 126 | IPR006780 | YABBY protein |
SuperFamily | SSF47095 | 1.38E-7 | 70 | 120 | IPR009071 | High mobility group box domain |
Gene3D | G3DSA:1.10.30.10 | 7.3E-5 | 72 | 120 | IPR009071 | High mobility group box domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0007275 | Biological Process | multicellular organism development |
Sequence ? help Back to Top |
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Protein Sequence Length: 153 aa Download sequence Send to blast |
MSAPQIVPAL EHVCYVHCNF CNTILALVQE NLKVHNFSFS TENYCEYAPS SSKYRMPTMF 60 STKGDQDHML HVRAPEKRQR VPSAYNRFIK EEIRRIKASN PAISHREAFS TAAKNWAHFP 120 NIHFGLGPLE SSKKLDEAIG AAGHPHKVQD LY* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Seita.9G154300.3.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004982272.1 | 1e-104 | protein YABBY 2 | ||||
Swissprot | Q10FZ7 | 3e-70 | YAB2_ORYSJ; Protein YABBY 2 | ||||
TrEMBL | A0A368SGV8 | 1e-111 | A0A368SGV8_SETIT; Uncharacterized protein | ||||
STRING | Si037789m | 4e-89 | (Setaria italica) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G26580.2 | 4e-40 | YABBY family protein |
Link Out ? help Back to Top | |
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Phytozome | Seita.9G154300.3.p |