PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Seita.9G154300.2.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
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Family | YABBY | ||||||||
Protein Properties | Length: 154aa MW: 17367.8 Da PI: 8.9085 | ||||||||
Description | YABBY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | YABBY | 25.4 | 4.4e-08 | 5 | 27 | 2 | 24 |
YABBY 2 dvfssseqvCyvqCnfCntilav 24 +++ + e+vCyv+CnfCntila+ Seita.9G154300.2.p 5 QIVPALEHVCYVHCNFCNTILAL 27 567788***************85 PP | |||||||
2 | YABBY | 129.4 | 4.9e-40 | 29 | 127 | 72 | 170 |
YABBY 72 leelkveeenlks.nvekeesastsvssekl.senedeevprvppvirPPekrqrvPsaynrfikeeiqrikasnPdishreafsaaaknW 160 +e+lkv++ ++++ n+ ++ +s++ ++ ++ s++ d++ ++ +v PekrqrvPsaynrfikeei+rikasnP ishreafs+aaknW Seita.9G154300.2.p 29 QENLKVHNFSFSTeNYCEYAPSSSKYRMPTMfSTKGDQD--HMLHVRAAPEKRQRVPSAYNRFIKEEIRRIKASNPAISHREAFSTAAKNW 117 688888888876415666666777777766644444333..44568889****************************************** PP YABBY 161 ahfPkihfgl 170 ahfP+ihfgl Seita.9G154300.2.p 118 AHFPNIHFGL 127 ********97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF04690 | 4.5E-5 | 11 | 27 | IPR006780 | YABBY protein |
Pfam | PF04690 | 6.6E-37 | 50 | 127 | IPR006780 | YABBY protein |
SuperFamily | SSF47095 | 3.14E-7 | 74 | 121 | IPR009071 | High mobility group box domain |
Gene3D | G3DSA:1.10.30.10 | 1.5E-4 | 76 | 121 | IPR009071 | High mobility group box domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0007275 | Biological Process | multicellular organism development |
Sequence ? help Back to Top |
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Protein Sequence Length: 154 aa Download sequence Send to blast |
MSAPQIVPAL EHVCYVHCNF CNTILALVQE NLKVHNFSFS TENYCEYAPS SSKYRMPTMF 60 STKGDQDHML HVRAAPEKRQ RVPSAYNRFI KEEIRRIKAS NPAISHREAF STAAKNWAHF 120 PNIHFGLGPL ESSKKLDEAI GAAGHPHKVQ DLY* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Seita.9G154300.2.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004982272.1 | 1e-102 | protein YABBY 2 | ||||
Swissprot | Q10FZ7 | 2e-68 | YAB2_ORYSJ; Protein YABBY 2 | ||||
TrEMBL | A0A368SGY8 | 1e-112 | A0A368SGY8_SETIT; Uncharacterized protein | ||||
STRING | Si037789m | 3e-87 | (Setaria italica) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G26580.2 | 1e-38 | YABBY family protein |
Link Out ? help Back to Top | |
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Phytozome | Seita.9G154300.2.p |