PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Seita.9G154300.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
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Family | YABBY | ||||||||
Protein Properties | Length: 196aa MW: 21867.1 Da PI: 8.8782 | ||||||||
Description | YABBY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | YABBY | 235 | 1.7e-72 | 5 | 169 | 2 | 170 |
YABBY 2 dvfssseqvCyvqCnfCntilavsvPstslfkvvtvrCGhCtsllsvnlakasqllaaeshldeslkeelleelkveeenlks.nvekees 91 +++ + e+vCyv+CnfCntilavsvPs+s++++vtvrCGhCtsllsvnl+ q l++++hl ++e+lkv++ ++++ n+ ++ Seita.9G154300.1.p 5 QIVPALEHVCYVHCNFCNTILAVSVPSNSMLNIVTVRCGHCTSLLSVNLRGLIQSLPVQNHLCL----LVQENLKVHNFSFSTeNYCEYAP 91 567788*******************************************************654....57788888888876415666666 PP YABBY 92 astsvssekl.senedeevprvppvirPPekrqrvPsaynrfikeeiqrikasnPdishreafsaaaknWahfPkihfgl 170 +s++ ++ ++ s++ d++ ++ +v PekrqrvPsaynrfikeei+rikasnP ishreafs+aaknWahfP+ihfgl Seita.9G154300.1.p 92 SSSKYRMPTMfSTKGDQD--HMLHVRAAPEKRQRVPSAYNRFIKEEIRRIKASNPAISHREAFSTAAKNWAHFPNIHFGL 169 666666666644444433..34567889**************************************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF04690 | 2.9E-69 | 11 | 169 | IPR006780 | YABBY protein |
SuperFamily | SSF47095 | 4.84E-7 | 116 | 163 | IPR009071 | High mobility group box domain |
Gene3D | G3DSA:1.10.30.10 | 2.3E-4 | 118 | 163 | IPR009071 | High mobility group box domain |
CDD | cd00084 | 4.07E-4 | 123 | 159 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0007275 | Biological Process | multicellular organism development |
Sequence ? help Back to Top |
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Protein Sequence Length: 196 aa Download sequence Send to blast |
MSAPQIVPAL EHVCYVHCNF CNTILAVSVP SNSMLNIVTV RCGHCTSLLS VNLRGLIQSL 60 PVQNHLCLLV QENLKVHNFS FSTENYCEYA PSSSKYRMPT MFSTKGDQDH MLHVRAAPEK 120 RQRVPSAYNR FIKEEIRRIK ASNPAISHRE AFSTAAKNWA HFPNIHFGLG PLESSKKLDE 180 AIGAAGHPHK VQDLY* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Seita.9G154300.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004982272.1 | 1e-143 | protein YABBY 2 | ||||
Swissprot | Q10FZ7 | 1e-102 | YAB2_ORYSJ; Protein YABBY 2 | ||||
TrEMBL | A0A368SGU3 | 1e-144 | A0A368SGU3_SETIT; Uncharacterized protein | ||||
STRING | Pavir.Ia01130.1.p | 1e-117 | (Panicum virgatum) | ||||
STRING | Si037789m | 1e-117 | (Setaria italica) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1394 | 37 | 121 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G26580.2 | 9e-58 | YABBY family protein |
Link Out ? help Back to Top | |
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Phytozome | Seita.9G154300.1.p |