PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Seita.9G146700.1.p
Common NameSETIT_040176mg
Organism
Setaria italica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
Family Trihelix
Protein Properties Length: 369aa    MW: 39526.6 Da    PI: 7.6825
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Seita.9G146700.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix60.34.8e-1940107269
            trihelix   2 WtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegek 69 
                         Wt  e+++Liea+r+++ +   g +  ++W++v +++++ g++rs +qC+++w+nl ++ykk+++ e 
  Seita.9G146700.1.p  40 WTVPETMLLIEAKRKVHGERHPGDQGLARWRWVEDYCWRAGCRRSHNQCNDRWDNLMRDYKKVRAYEA 107
                         ***************************************************************98776 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS500908.0373296IPR017877Myb-like domain
Gene3DG3DSA:1.10.10.602.6E-53598IPR009057Homeodomain-like
SuperFamilySSF466891.2E-63597IPR009057Homeodomain-like
PfamPF138379.7E-1438107No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 369 aa     Download sequence    Send to blast
MEGGSRANLL GQAGDEQSRS VVMAGAGALT VARDYRRGNW TVPETMLLIE AKRKVHGERH  60
PGDQGLARWR WVEDYCWRAG CRRSHNQCND RWDNLMRDYK KVRAYEAAGG GGGGGAGRAP  120
SYWAMGRAER KEKGLPSNLL REIYDAMGEV IERRMSTGGS GGGGSSGAGG GFLGASSSLL  180
DVPMQASPLA QVLPRPLPLE QETRHHGHGA AHFNPESPER KRRRPSLDEL RPGTGSSTPP  240
APGTHGHYRQ EQGHRHREDD DDHGGGDESS DSECSDDDDG DEVLSGAIGR CAAILSEALE  300
SREAAEERRH REVMAVEERR GRARQARREA GEQCVAGLAA AVNQLAGSML ALAAAKHKGK  360
GGGHAAPK*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1219223RKRRR
Cis-element ? help Back to Top
SourceLink
PlantRegMapSeita.9G146700.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_022679047.10.0uncharacterized protein LOC101769216
TrEMBLK4AMN20.0K4AMN2_SETIT; Uncharacterized protein
STRINGSi040176m0.0(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP32943571
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G35640.14e-42Trihelix family protein