PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Seita.9G112200.1.p | ||||||||
Common Name | LOC101768511, SETIT_034954mg | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
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Family | GRAS | ||||||||
Protein Properties | Length: 563aa MW: 60743.1 Da PI: 5.5511 | ||||||||
Description | GRAS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GRAS | 342.2 | 9.1e-105 | 193 | 562 | 3 | 374 |
GRAS 3 elLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkf 93 + Ll+c + + d +la L +++ as dgdp +R+a+yf+ ALa+rla + ++ ++ ++++ s+e + +k++++++P+ kf Seita.9G112200.1.p 193 QSLLACSRTAA-ADPALAAVELVKVRAAASDDGDPAERVAFYFADALARRLAC---GGGAQPSTAPDTRFASDELTLCYKTLNDACPYSKF 279 67999999655.588999999999****************************8...22233333444444599999*************** PP GRAS 94 shltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegpp.slRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvl 181 +hlta qaIlea+ ++++Hi+Df+i qG+QW+aLlqaLa+Rpeg+p ++Ri gv sp g + +l +t rL++fA+ lgv+fef + Seita.9G112200.1.p 280 AHLTASQAILEATGAATKIHIVDFGIVQGIQWAALLQALATRPEGKPsRVRISGVPSPYLGpkPAASLAATSARLRDFAKLLGVDFEFVP- 369 *******************************************887769********998888999************************. PP GRAS 182 vakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsle 272 + + +++l+ +++ v+++Ea+aVn++lql++ll ++++++ ++vL+l kslsP vv++ e e+++n++ F++rf++al yy +f+sl+ Seita.9G112200.1.p 370 LLRPVHELDRSDFLVESDEAVAVNFMLQLYHLL---GDSDEPVRRVLRLAKSLSPSVVTLGEYEVSLNRAGFVDRFANALCYYKPVFESLD 457 599******************************...66666777*********************************************** PP GRAS 273 aklpreseerikvErellgreivnvva.cegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvk.sdgyrveeesgslv.l 360 + ++r+s er+ vEr ++g++i+ +v egaer+ r+ ++W+ +e +GF+pv+ls++a++qa+ ll +++ + y++ e +++ l Seita.9G112200.1.p 458 VAMARDSPERVRVERCMFGERIRRAVGpEEGAERTDRMAASREWQTLMECCGFEPVKLSNYAMSQADFLLWNYDaKYKYSLVELPPAFLsL 548 **************************8356899*****************************************88889999*9999988* PP GRAS 361 gWkdrpLvsvSaWr 374 W++rpL++vSaWr Seita.9G112200.1.p 549 AWEKRPLLTVSAWR 562 *************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50985 | 55.636 | 165 | 540 | IPR005202 | Transcription factor GRAS |
Pfam | PF03514 | 3.1E-102 | 193 | 562 | IPR005202 | Transcription factor GRAS |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
Sequence ? help Back to Top |
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Protein Sequence Length: 563 aa Download sequence Send to blast |
MAYMCADSGN LMAIAQQVIQ QQQQQQQQHH QRHHHHHHLP PPPMQLPPRQ APPMPPAPAP 60 PHGQIPGASL PYGGAAWPHH SEHFFSDAFV GASAADAVFS DLAAAADFDS DVWMDSLIGD 120 PPFADSDLER LIFTTPPPPV PVPAPAAAAH VDAAAQPEAA APASLPQPAA VAAPAACSSP 180 SFMDASCSEP VLQSLLACSR TAAADPALAA VELVKVRAAA SDDGDPAERV AFYFADALAR 240 RLACGGGAQP STAPDTRFAS DELTLCYKTL NDACPYSKFA HLTASQAILE ATGAATKIHI 300 VDFGIVQGIQ WAALLQALAT RPEGKPSRVR ISGVPSPYLG PKPAASLAAT SARLRDFAKL 360 LGVDFEFVPL LRPVHELDRS DFLVESDEAV AVNFMLQLYH LLGDSDEPVR RVLRLAKSLS 420 PSVVTLGEYE VSLNRAGFVD RFANALCYYK PVFESLDVAM ARDSPERVRV ERCMFGERIR 480 RAVGPEEGAE RTDRMAASRE WQTLMECCGF EPVKLSNYAM SQADFLLWNY DAKYKYSLVE 540 LPPAFLSLAW EKRPLLTVSA WR* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5hyz_A | 0.0 | 188 | 562 | 1 | 375 | GRAS family transcription factor containing protein, expressed |
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Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor involved in plant development (By similarity). Involved in environmental abiotic stress resistance. May increase the expression of stress-responsive genes (By similarity). Binds DNA in vitro (PubMed:27081181). {ECO:0000250|UniProtKB:A0A024B7I0, ECO:0000250|UniProtKB:Q9SCR0, ECO:0000269|PubMed:27081181}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Seita.9G112200.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | KJ727018 | 0.0 | KJ727018.1 Zea mays clone pUT3999 GRAS transcription factor (GRAS55) gene, partial cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004981941.1 | 0.0 | scarecrow-like protein 4 | ||||
Swissprot | Q53K16 | 0.0 | SCL7_ORYSJ; SCARECROW-LIKE protein 7 | ||||
TrEMBL | K4A7U8 | 0.0 | K4A7U8_SETIT; Uncharacterized protein | ||||
STRING | Si034954m | 0.0 | (Setaria italica) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP8569 | 37 | 48 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G66770.1 | 1e-132 | GRAS family protein |
Link Out ? help Back to Top | |
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Phytozome | Seita.9G112200.1.p |
Entrez Gene | 101768511 |
Publications ? help Back to Top | |||
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