PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Seita.9G108200.1.p | ||||||||
Common Name | LOC101752968, SETIT_036678mg | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
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Family | bHLH | ||||||||
Protein Properties | Length: 318aa MW: 34877.9 Da PI: 5.4038 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 32.7 | 1.3e-10 | 148 | 196 | 3 | 55 |
HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +h+ +Er RR++i +++ L++l+P + sk Ka +L + ++Y++sLq Seita.9G108200.1.p 148 NSHSLAERLRRKKISERMKLLQDLVPGC----SKITGKAVMLDEIINYVQSLQ 196 58**************************....899*****************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF47459 | 9.55E-17 | 143 | 212 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 1.77E-11 | 143 | 200 | No hit | No description |
PROSITE profile | PS50888 | 15.447 | 145 | 195 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 2.1E-16 | 145 | 212 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 5.3E-8 | 148 | 196 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 4.6E-10 | 151 | 201 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009637 | Biological Process | response to blue light | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 318 aa Download sequence Send to blast |
MYSGQQSDQG PSANSGREFS EANWNSVTMH QKMGYNSGPY GFGPYSMGLE ERPGLYQSSS 60 GTFSQNIQMS DEHSGGVKKR KGMDDCVGLL QNAGDQQTEG SSQPERNSME EGNRKISPKM 120 QSKEDSSDGD GTKEDYVHIR AKRGQATNSH SLAERLRRKK ISERMKLLQD LVPGCSKITG 180 KAVMLDEIIN YVQSLQRQVE FLSMKLATVN PELGFDIEQI LSQQMMLSQD RHFAIYGADP 240 GSSSLAAQFN QGIMQPEIMC NISNPVDVLQ GTIHDVSTMN QIPAMWEGLQ NLPQMNFNPG 300 VAAGSSTNNS GSMKIEQ* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional activator involved in cell elongation. Regulates the expression of a subset of genes involved in cell expansion by binding to the G-box motif. Binds to chromatin DNA of the FT gene and promotes its expression, and thus triggers flowering in response to blue light (PubMed:24130508). {ECO:0000269|PubMed:23161888, ECO:0000269|PubMed:24130508}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00135 | DAP | Transfer from AT1G10120 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Seita.9G108200.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT035348 | 0.0 | BT035348.1 Zea mays full-length cDNA clone ZM_BFb0057A01 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004981901.1 | 0.0 | transcription factor bHLH49 | ||||
Refseq | XP_004981902.1 | 0.0 | transcription factor bHLH49 | ||||
Refseq | XP_022678584.1 | 0.0 | transcription factor bHLH49 | ||||
Swissprot | Q6NKN9 | 2e-52 | BH074_ARATH; Transcription factor bHLH74 | ||||
TrEMBL | K4ACS8 | 0.0 | K4ACS8_SETIT; Uncharacterized protein | ||||
STRING | Si036685m | 0.0 | (Setaria italica) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP6033 | 36 | 50 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G10120.1 | 1e-54 | bHLH family protein |
Link Out ? help Back to Top | |
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Phytozome | Seita.9G108200.1.p |
Entrez Gene | 101752968 |
Publications ? help Back to Top | |||
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