PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Seita.9G098200.2.p

Organism

Setaria italica

Taxonomic ID

4555

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria

Family

bHLH

Protein Properties

Length: 285aa MW: 31414.2 Da PI: 7.3248

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Seita.9G098200.2.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	23.7	8.8e-08	135	179	5	54
HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 h +rEr+RR+++ ++++ L ++ + K +K +i++ A YI++L Seita.9G098200.2.p 135 HMMRERQRREKLSQSYADLYAMVAAR-----SKGDKNSIVQSAAIYIHEL 179 889********************7.....6999999*******998 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50888	11.395	130	179	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	7.59E-12	130	198	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	2.2E-9	134	197	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	4.96E-7	134	184	No hit	No description
Pfam	PF00010	1.5E-5	135	179	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	7.0E-5	136	185	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0009414	Biological Process	response to water deprivation
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 285 aa Download sequence Send to blast
MQMDSYFYAG CFHDEVPFYP HGAAPPSPEL PFGLIASPGE PEPPFAPTAA ALQNQNYSVS 60 GPELLLQSMG AGATHVSGGD AHVHTQVFDD TLSGRMGGGL DQDQTMGEEG EDEPRQQRRQ 120 EPAGATVESS RGFRHMMRER QRREKLSQSY ADLYAMVAAR SKGDKNSIVQ SAAIYIHELR 180 GAREQLRRRN EELKARILGH DAGRQCVKVQ FEVDEPASAV DSMISALRRL KGMDVRARGI 240 RSTMSGRRLW TEMNVETTVG KRMHKQLSGL RQQLDELVKS SASS*

Functional Description ? help Back to Top
Source	Description
UniProt	May act on an initial response of jasmonate-regulated gene expression toward drought tolerance as part of a BHLH148-TIFY11D/JAZ12-COI1A complex. {ECO:0000269\|PubMed:21332845}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Seita.9G098200.2.p

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: By abscisic acid (ABA), methyl jasmonate (MeJA), drought, cold, salt and wounding. {ECO:0000269\|PubMed:21332845}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	KJ726793	1e-129	KJ726793.1 Zea mays clone pUT2279 bHLH transcription factor (bHLH103) mRNA, partial cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_022678746.1	0.0	transcription factor BHLH148-like isoform X2
Swissprot	Q75KV9	4e-86	BH148_ORYSJ; Transcription factor BHLH148
TrEMBL	A0A368SEV0	0.0	A0A368SEV0_SETIT; Uncharacterized protein
STRING	Si036716m	0.0	(Setaria italica)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G43650.1	2e-19	bHLH family protein

Link Out ? help Back to Top
Phytozome	Seita.9G098200.2.p

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764] Yilmaz A, et al. GRASSIUS: a platform for comparative regulatory genomics across the grasses. Plant Physiol., 2009. 149(1): p. 171-80 [PMID:18987217]