PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Seita.9G098200.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
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Family | bHLH | ||||||||
Protein Properties | Length: 401aa MW: 43032.1 Da PI: 6.6151 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 23 | 1.4e-07 | 221 | 265 | 5 | 54 |
HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 h +rEr+RR+++ ++++ L ++ + K +K +i++ A YI++L Seita.9G098200.1.p 221 HMMRERQRREKLSQSYADLYAMVAAR-----SKGDKNSIVQSAAIYIHEL 265 889**********************7.....6999999*********998 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50888 | 11.395 | 216 | 265 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 1.31E-11 | 216 | 284 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 1.41E-7 | 220 | 270 | No hit | No description |
Gene3D | G3DSA:4.10.280.10 | 3.9E-9 | 220 | 283 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 2.5E-5 | 221 | 265 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 7.0E-5 | 222 | 271 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009414 | Biological Process | response to water deprivation | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 401 aa Download sequence Send to blast |
MPGSIMFGGR RRGGDQEMGE TLMRNSELET VVGAGIAGSF VFRQATRSPP LRVSPPSPSI 60 ATPAATAPAT GKPSDRASGA VVIRPEMQMD SYFYAGCFHD EVPFYPHGAA PPSPELPFGL 120 IASPGEPEPP FAPTAAALQN QNYSVSGPEL LLQSMGAGAT HVSGGDAHVH TQVFDDTLSG 180 RMGGGLDQDQ TMGEEGEDEP RQQRRQEPAG ATVESSRGFR HMMRERQRRE KLSQSYADLY 240 AMVAARSKGD KNSIVQSAAI YIHELRGARE QLRRRNEELK ARILGHDAGR QCVKVQFEVD 300 EPASAVDSMI SALRRLKGMD VRARGIRSTM SGRRLWTEMN VETTIAAGEV EKAVEEALMQ 360 EVERKQPAEA GSGGPGFPGT SSSGGRGWGP QASSHVQNVF * |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | May act on an initial response of jasmonate-regulated gene expression toward drought tolerance as part of a BHLH148-TIFY11D/JAZ12-COI1A complex. {ECO:0000269|PubMed:21332845}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Seita.9G098200.1.p |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By abscisic acid (ABA), methyl jasmonate (MeJA), drought, cold, salt and wounding. {ECO:0000269|PubMed:21332845}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | EU955623 | 1e-151 | EU955623.1 Zea mays clone 1539864 helix-loop-helix DNA-binding domain containing protein mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_022678744.1 | 0.0 | transcription factor BHLH148-like isoform X1 | ||||
Refseq | XP_022678745.1 | 0.0 | transcription factor BHLH148-like isoform X1 | ||||
Swissprot | Q75KV9 | 1e-102 | BH148_ORYSJ; Transcription factor BHLH148 | ||||
TrEMBL | A0A368SF24 | 0.0 | A0A368SF24_SETIT; Uncharacterized protein | ||||
STRING | Si036716m | 0.0 | (Setaria italica) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP5940 | 34 | 50 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G43650.1 | 3e-19 | bHLH family protein |
Link Out ? help Back to Top | |
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Phytozome | Seita.9G098200.1.p |
Publications ? help Back to Top | |||
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