PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Seita.9G084400.1.p
Organism
Setaria italica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
Family WRKY
Protein Properties Length: 369aa    MW: 39629.9 Da    PI: 7.655
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Seita.9G084400.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY94.86.2e-30134190259
                         --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
                WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                         +Dgy+WrKYGqK+ k++e prsYY+Ct  gCpvkk vers  d+ ++eitY+g+Hnh+
  Seita.9G084400.1.p 134 KDGYSWRKYGQKQLKDAESPRSYYKCTRDGCPVKKVVERSF-DGFITEITYKGRHNHP 190
                         8****************************************.***************8 PP
2WRKY103.79.9e-33266324159
                         ---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
                WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                         ldDgy+WrKYGqK+vkg++ prsYY+Ct  +C+v+k++er+++dp++v +tY+g+Hnh+
  Seita.9G084400.1.p 266 LDDGYRWRKYGQKVVKGNPRPRSYYKCTVDNCNVRKQIERASTDPRCVLTTYTGRHNHD 324
                         59********************************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5081123.169128192IPR003657WRKY domain
Gene3DG3DSA:2.20.25.805.6E-27130192IPR003657WRKY domain
SuperFamilySSF1182905.75E-24132192IPR003657WRKY domain
SMARTSM007744.9E-32133191IPR003657WRKY domain
PfamPF031062.5E-23134190IPR003657WRKY domain
Gene3DG3DSA:2.20.25.809.6E-34251326IPR003657WRKY domain
SuperFamilySSF1182903.14E-28259326IPR003657WRKY domain
PROSITE profilePS5081135.209261326IPR003657WRKY domain
SMARTSM007741.3E-35266325IPR003657WRKY domain
PfamPF031063.5E-24267324IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 369 aa     Download sequence    Send to blast
MTQRNHMQLS HVVQLAIPQV HNNAASLHSM QANYAPPVPS YQQPTSFAPS PLGGRMDPYP  60
PYLLSDPPPQ WPPPRSTAAA ASSLPPQNFA VLLPRYDQDM QQLRAAAFFG AGSSQSQAAL  120
PLLPPAPAIE QPAKDGYSWR KYGQKQLKDA ESPRSYYKCT RDGCPVKKVV ERSFDGFITE  180
ITYKGRHNHP RPQERGHAAG GNDALAAAAE DDVEGPSDDD DDALHEDDLD GGHGAPGMGA  240
DGGEGGQRVV KKPKIIIQTP SEVDLLDDGY RWRKYGQKVV KGNPRPRSYY KCTVDNCNVR  300
KQIERASTDP RCVLTTYTGR HNHDPPGRGN EAPATAAAAG GGHPAPSAGG SGTFQQTGGG  360
ARQLKEES*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A8e-34135326877Probable WRKY transcription factor 4
2lex_A8e-34135326877Probable WRKY transcription factor 4
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapSeita.9G084400.1.p
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By salicylic acid and during leaf senescence. {ECO:0000269|PubMed:11449049, ECO:0000269|PubMed:11722756}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3638032e-78AK363803.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, partial cds, clone: NIASHv2019A07.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_014661260.10.0probable WRKY transcription factor 26
SwissprotQ9ZQ704e-68WRKY3_ARATH; Probable WRKY transcription factor 3
TrEMBLA0A368SED50.0A0A368SED5_SETIT; Uncharacterized protein
STRINGSi034188m0.0(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP28753236
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G01080.12e-63WRKY DNA-binding protein 58
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Aamir M, et al.
    Structural and Functional Insights into WRKY3 and WRKY4 Transcription Factors to Unravel the WRKY-DNA (W-Box) Complex Interaction in Tomato (Solanum lycopersicum L.). A Computational Approach.
    Front Plant Sci, 2017. 8: p. 819
    [PMID:28611792]