PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Seita.9G084000.1.p
Organism
Setaria italica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
Family bHLH
Protein Properties Length: 331aa    MW: 33926.2 Da    PI: 8.3697
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Seita.9G084000.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH11.60.00053166211454
                         HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
                 HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                         a n+r r R +++ +++  L++l+ +      +K + a++L +A  YI+ L
  Seita.9G084000.1.p 166 ATNKRPRVRKEKLGERIIALQQLVSPF-----GKSDTASVLHEALGYIRFL 211
                         679**********************98.....8****************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088812.163162211IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474592.75E-12165229IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.107.0E-8166229IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000833.35E-4168216No hitNo description
SMARTSM003530.003168217IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 331 aa     Download sequence    Send to blast
MVKEEEIVAE AGGRGYMDLL GLGGEDYLLC MSPSSYFSSS VVSTATTTSA TPAAASSPTC  60
SSYLDLAPAY HQMLSFAGQG QYHGGDGIFG LQYYGGDQAI PMAVPVPQKS SPTTECSSSI  120
SSMSSSPPAT TVSAISSPKP QAFKKKGSRS SGQRKAAPAA VATTAATNKR PRVRKEKLGE  180
RIIALQQLVS PFGKSDTASV LHEALGYIRF LHDQVQALSS PYMQQRQPVS AHAPLCSYSA  240
AALWQAPESA AGTVVEPPRP TSDLRSRGLC LVPIACTEHV AGGVHGHGHG NGADLWSVAA  300
GMAKAAAENK AAAAVGALPG GGHGHHGHLA *
Cis-element ? help Back to Top
SourceLink
PlantRegMapSeita.9G084000.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012704673.10.0transcription factor bHLH113 isoform X1
TrEMBLA0A368SEK20.0A0A368SEK2_SETIT; Uncharacterized protein
STRINGSi036666m1e-154(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP80822529
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G19500.12e-26bHLH family protein