PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Seita.9G080400.1.p
Common NameLOC101778005, SETIT_039720mg
Organism
Setaria italica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
Family bHLH
Protein Properties Length: 350aa    MW: 37620.4 Da    PI: 6.1311
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Seita.9G080400.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH33.57.8e-112753151055
                         HHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                 HLH  10 rrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                         rrRR+riN+++  L++l+P+      +K++ +++Le+Av+Y++ Lq
  Seita.9G080400.1.p 275 RRRRERINERLKILQKLVPNG-----TKVDISTMLEEAVHYVRFLQ 315
                         9******************97.....8******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088815.193265314IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474597.72E-15267331IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.104.7E-14270328IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003533.7E-13271320IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000103.5E-8275315IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000834.80E-4281319No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 350 aa     Download sequence    Send to blast
MSQAELSTWL ESRDAHWCSQ YQAAPAPDEE SEIVAQFLAA PYPYQNDDGG EEQEQKRQHH  60
KLGEISATSS TYWPDEPGHV SDPGTGACDY WPSNGDASNS NSSGSGAYFD GSGCCYYYLA  120
EPDVSLGINT RTVLPCASSI DLNLLGDGEE EGAASLVHTV PPNPSPADHS HTASHRNVGD  180
DSAAARAAVS APKRKAQAGN DGGDLGRHKK KEKKTASKAA QKCSQESAQS KGSCSADESM  240
PNCSAVNRRS GAHGGNVKAR AAKGSATDPQ SLYARRRRER INERLKILQK LVPNGTKVDI  300
STMLEEAVHY VRFLQQQIKM LSSDEMWMYA PIAYNGMSLG IDLRISTPQ*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1192213KRKAQAGNDGGDLGRHKKKEKK
Cis-element ? help Back to Top
SourceLink
PlantRegMapSeita.9G080400.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012704353.10.0transcription factor bHLH85
TrEMBLK4ALE00.0K4ALE0_SETIT; Uncharacterized protein
STRINGSi039720m0.0(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP144452123
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G14760.13e-40bHLH family protein