PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Seita.9G049500.1.p
Common NameLOC101784692, SETIT_037131mg
Organism
Setaria italica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
Family bHLH
Protein Properties Length: 256aa    MW: 27133.9 Da    PI: 9.0704
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Seita.9G049500.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH35.51.8e-11136183455
                         HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                 HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                         +h+ +Er RR++i +++  L++l+P +    +k   Ka++L + ++YI+sLq
  Seita.9G049500.1.p 136 SHSLAERARREKISERMKVLQDLVPGC----NKVIGKASVLDEIINYIQSLQ 183
                         8*************************9....677*****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000831.42E-11130187No hitNo description
SuperFamilySSF474598.37E-18130198IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088816.406132182IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.9E-18132201IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000107.3E-9136183IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003533.8E-11138188IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 256 aa     Download sequence    Send to blast
MDPAPAVAAE LWRPPHLAAG GGRAVEATSA VTEKSGGGRG GGSAGRRKQR EAPASEDDSS  60
RIVSTSGGGG GQDLTDSGAK RFKTNKSNDN NGNQRTEAET QTRSAGKGVS KNPPAPEPPK  120
QDYIHVRARR GQATDSHSLA ERARREKISE RMKVLQDLVP GCNKVIGKAS VLDEIINYIQ  180
SLQCQVEFLS MKLEAVNAHA NNGEAFPSKD FAAQTYNTAP GLTFDTQTPR EYAQGTSASE  240
WLHMQIGGGA YERVS*
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that may regulate jasmonate-regulated genes. {ECO:0000250|UniProtKB:Q69WS3}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapSeita.9G049500.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004981383.10.0transcription factor BHLH089
SwissprotQ84T081e-116BH089_ORYSJ; Transcription factor BHLH089
TrEMBLK4AE240.0K4AE24_SETIT; Uncharacterized protein
STRINGSi037131m0.0(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP30653577
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G59640.14e-68BIG PETAL P
Publications ? help Back to Top
  1. Yilmaz A, et al.
    GRASSIUS: a platform for comparative regulatory genomics across the grasses.
    Plant Physiol., 2009. 149(1): p. 171-80
    [PMID:18987217]