PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Seita.8G182900.1.p | ||||||||
Common Name | SETIT_028206mg | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
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Family | M-type_MADS | ||||||||
Protein Properties | Length: 209aa MW: 22047.1 Da PI: 6.5212 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 32.8 | 8.9e-11 | 4 | 37 | 9 | 42 |
HHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-T CS SRF-TF 9 rqvtfskRrngilKKAeELSvLCdaevaviifss 42 r t+ +R + ++KKA+EL L +aev+v+++ s Seita.8G182900.1.p 4 RRATYERRCQSLMKKASELAALPGAEVCVVVYDS 37 788****************************966 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50066 | 10.54 | 1 | 48 | IPR002100 | Transcription factor, MADS-box |
SuperFamily | SSF55455 | 9.55E-12 | 3 | 85 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 1.2E-10 | 3 | 37 | IPR002100 | Transcription factor, MADS-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 209 aa Download sequence Send to blast |
MATRRATYER RCQSLMKKAS ELAALPGAEV CVVVYDSEDA GAAAAQPEVW PSAEEAARLF 60 RKLKAMPEGR FKKTMSQLQF LQNRVSKVRE QVKKSAVVNG ELESSALLHE CVAGRRPGLV 120 GVTEKELAGL MDLVEAKMSK VRARLQQLGV GEGAHPRAAP PMENGGELGA VFCSAFEGGD 180 GAGPSGSGCE AIEASNQGCD LGSPWAQE* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Seita.8G182900.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004980716.1 | 1e-149 | agamous-like MADS-box protein AGL80 | ||||
TrEMBL | A0A368S958 | 1e-148 | A0A368S958_SETIT; Uncharacterized protein | ||||
STRING | Si028206m | 1e-148 | (Setaria italica) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP27643 | 3 | 3 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G26650.1 | 7e-16 | AGAMOUS-like 36 |
Link Out ? help Back to Top | |
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Phytozome | Seita.8G182900.1.p |