PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | AT5G26650.1 | ||||||||
Common Name | AGL36, F21E10.10 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
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Family | M-type_MADS | ||||||||
Protein Properties | Length: 366aa MW: 41811.2 Da PI: 6.286 | ||||||||
Description | AGAMOUS-like 36 | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 54.2 | 1.9e-17 | 9 | 48 | 3 | 42 |
--SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-T CS SRF-TF 3 ienksnrqvtfskRrngilKKAeELSvLCdaevaviifss 42 i n++ r+++f+kR+ gi+KK +ELS+LC+++++ +i+s+ AT5G26650.1 9 IANERSRKTSFIKRKDGIFKKLHELSTLCGVQACALIYSP 48 89************************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00432 | 2.2E-21 | 1 | 58 | IPR002100 | Transcription factor, MADS-box |
PROSITE profile | PS50066 | 15.39 | 1 | 47 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 1.3E-6 | 1 | 21 | IPR002100 | Transcription factor, MADS-box |
SuperFamily | SSF55455 | 1.31E-21 | 2 | 93 | IPR002100 | Transcription factor, MADS-box |
CDD | cd00266 | 3.34E-31 | 2 | 83 | No hit | No description |
Pfam | PF00319 | 5.2E-16 | 9 | 48 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 1.3E-6 | 21 | 36 | IPR002100 | Transcription factor, MADS-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Plant Ontology ? help Back to Top | ||||||
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PO Term | PO Category | PO Description | ||||
PO:0009001 | anatomy | fruit |
Sequence ? help Back to Top |
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Protein Sequence Length: 366 aa Download sequence Send to blast |
MKKVKLSLIA NERSRKTSFI KRKDGIFKKL HELSTLCGVQ ACALIYSPFI PVPESWPSRE 60 GAKKVASRFL EMPPTARTKK MMDQETYLME RITKAKEQLK NLAAENRELQ VRRFMFDCVE 120 GKMSQYHYDA KDLQDLQSCI NLYLDQLNGR IESIKENGES LLSSVSPFPT RIGVDEIGDE 180 SFSDSPIHAT TGVVDTLNAT NPHVLTGDMT PFLDADATAV TASSRFFDHI PYENMNMSQN 240 LHEPFQHLVP TNVCDFFQNQ NMNQVQYQAP NNLFNQIQRE FYNINLNLNL NLNSNQYLNQ 300 QQSFMNPMVE QHMNHVGGRE SIPFVDGNCY NYHQLPSNQL PAVDHASTSY MPSTTGVYDP 360 YINNNL |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
At.49065 | 0.0 | silique |
Expression -- Microarray ? help Back to Top | ||||||
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Source | ID | E-value | ||||
GEO | 79597814 | 0.0 | ||||
Genevisible | 246836_s_at | 1e-109 | ||||
Expression Atlas | AT5G26650 | - | ||||
AtGenExpress | AT5G26650 | - |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor. |
Function -- GeneRIF ? help Back to Top | ||||||
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Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | AT5G26650.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Interaction ? help Back to Top | ||||||
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Source | Intact With | |||||
BioGRID | AT5G60440, AT1G01530 | |||||
IntAct | Search Q7XJK6 |
Phenotype -- Mutation ? help Back to Top | ||||||
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Source | ID | |||||
T-DNA Express | AT5G26650 |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | CP002688 | 0.0 | CP002688.1 Arabidopsis thaliana chromosome 5 sequence. | |||
GenBank | F21E10 | 0.0 | AF058914.1 Arabidopsis thaliana BAC F21E10, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | NP_850880.2 | 0.0 | AGAMOUS-like 36 | ||||
Swissprot | Q7XJK6 | 0.0 | AGL36_ARATH; Agamous-like MADS-box protein AGL36 | ||||
TrEMBL | A0A178UI70 | 0.0 | A0A178UI70_ARATH; AGL36 | ||||
STRING | AT5G26650.1 | 0.0 | (Arabidopsis thaliana) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM70 | 28 | 415 | Representative plant | OGRP114 | 13 | 173 |
Link Out ? help Back to Top | |
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Phytozome | AT5G26650.1 |
Entrez Gene | 832724 |
iHOP | AT5G26650 |
wikigenes | AT5G26650 |