PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Seita.8G169300.1.p
Common NameSETIT_028023mg
Organism
Setaria italica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
Family WRKY
Protein Properties Length: 498aa    MW: 56763.8 Da    PI: 8.0248
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Seita.8G169300.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY681.4e-21268327258
                         --SS-EEEEEEE--TT-SS-EEEEEE-ST...T---EEEEEE-SSSTTEEEEEEES--SS CS
                WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa...gCpvkkkversaedpkvveitYegeHnh 58 
                          Dgy+Wr YGqKe+ g+++pr+YY C ++   +C+++k+v++ +ed ++++++Y+g+H++
  Seita.8G169300.1.p 268 YDGYSWRMYGQKEIPGAKHPRGYYLCMHRqsqRCTATKQVQCRDEDSTLFDVIYHGTHTC 327
                         59*************************998889*************************98 PP
2WRKY84.51e-26415475259
                         --SS-EEEEEEE--TT-SS-EEEEEE-ST...T---EEEEEE-SSSTTEEEEEEES--SS- CS
                WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa...gCpvkkkversaedpkvveitYegeHnhe 59 
                         dDgy+WrKYGqK+v g+++pr+YYrCt++   gC ++k+v+r++edp +++++Y g H+++
  Seita.8G169300.1.p 415 DDGYSWRKYGQKKVLGANYPRAYYRCTHRhsqGCVATKQVQRCNEDPMAFDVIYIGIHTCT 475
                         8***************************98999**************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF520471.1E-273261No hitNo description
Gene3DG3DSA:3.80.10.102.0E-183252IPR032675Leucine-rich repeat domain, L domain-like
PROSITE profilePS5081118.246262325IPR003657WRKY domain
Gene3DG3DSA:2.20.25.801.1E-22263328IPR003657WRKY domain
SuperFamilySSF1182907.85E-20266327IPR003657WRKY domain
SMARTSM007743.6E-27267329IPR003657WRKY domain
PfamPF031062.2E-21269327IPR003657WRKY domain
Gene3DG3DSA:2.20.25.801.9E-27402476IPR003657WRKY domain
PROSITE profilePS5081122.068409472IPR003657WRKY domain
SuperFamilySSF1182901.96E-25411476IPR003657WRKY domain
SMARTSM007746.3E-39414476IPR003657WRKY domain
PfamPF031062.7E-24415474IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 498 aa     Download sequence    Send to blast
MAKLRSFNAI KCPISMLSQL VSFQTLRVLV LEGCEIMEGY HLKHLGKLRQ LRYLGLKDTR  60
VAKLPREIGD LVHLLVLDVR DTGLEELPET VRELSKLMSL RVNDSMSYLW LLWVGNLTSL  120
QELVLGNVVM SPWLIVELSK LTELRILEIS FLESGEHMES LLEALRGLCR IRILMLRFWP  180
DEVLVSSWEG WEPPRQLCQF VMEGVCLARL PGWVNSTCVP HLSYLRLKLL VMEAQDWEVL  240
ARMPELHSLC IYSTLRLSSA GSIESPIYDG YSWRMYGQKE IPGAKHPRGY YLCMHRQSQR  300
CTATKQVQCR DEDSTLFDVI YHGTHTCVQR TSVEISACQN LVEENYMLVE QGPDWDVQSL  360
ASLFLEMPTS SSITDDTNRP FKRSKKRRSH MEMQKVKVRV VKVRVGAVSG EGPADDGYSW  420
RKYGQKKVLG ANYPRAYYRC THRHSQGCVA TKQVQRCNED PMAFDVIYIG IHTCTQSAVA  480
MQPPLEQNPS ASGGSTQ*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6ir8_A1e-21269474968OsWRKY45
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1385389KRRSH
Cis-element ? help Back to Top
SourceLink
PlantRegMapSeita.8G169300.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015615587.11e-68disease resistance protein RGA5-like isoform X1
RefseqXP_025877402.14e-70disease resistance protein RGA5-like isoform X2
TrEMBLK3ZN480.0K3ZN48_SETIT; Uncharacterized protein
STRINGSi028023m0.0(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP558
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G23810.12e-27WRKY family protein