PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Seita.8G116700.1.p
Organism
Setaria italica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
Family C3H
Protein Properties Length: 451aa    MW: 48225.1 Da    PI: 8.5122
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Seita.8G116700.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH33.38.2e-116487326
                        S---SGGGGTS--TTTTT-SS-SS CS
             zf-CCCH  3 telCrffartGtCkyGdrCkFaHg 26
                        ++ C++++rtG C++G +CkF+H+
  Seita.8G116700.1.p 64 EPDCSYYMRTGMCRFGMTCKFNHP 87
                        789********************8 PP
2zf-CCCH39.59.3e-13108133227
                         -S---SGGGGTS--TTTTT-SS-SSS CS
             zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHgp 27 
                         ++++C+++++tGtCk+G++CkF+H++
  Seita.8G116700.1.p 108 GQPECQYYLKTGTCKFGATCKFHHPR 133
                         689*********************96 PP
3zf-CCCH36.67.7e-12155179327
                         S---SGGGGTS--TTTTT-SS-SSS CS
             zf-CCCH   3 telCrffartGtCkyGdrCkFaHgp 27 
                         +++C +++rtG+Ck+G++CkF+H++
  Seita.8G116700.1.p 155 EKECAYYLRTGQCKFGSTCKFHHPQ 179
                         679********************97 PP
4zf-CCCH39.21.2e-12316341227
                         -S---SGGGGTS--TTTTT-SS-SSS CS
             zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHgp 27 
                         ++++C+f+++tG Ck+G+ CkF+H++
  Seita.8G116700.1.p 316 DQPECQFYMKTGDCKFGAVCKFHHPR 341
                         689*********************96 PP
5zf-CCCH37.54e-12361386126
                         --S---SGGGGTS--TTTTT-SS-SS CS
             zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHg 26 
                         +++++C+f++r+G Ck+G++CkF H+
  Seita.8G116700.1.p 361 PGEPICSFYSRYGMCKFGPNCKFDHP 386
                         5799*********************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003561.8E-46188IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.2536189IPR000571Zinc finger, CCCH-type
PfamPF006421.8E-76487IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.57E-56689IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.104.9E-46788IPR000571Zinc finger, CCCH-type
SMARTSM003561.6E-6106133IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.77106134IPR000571Zinc finger, CCCH-type
PfamPF006424.0E-10108133IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.09E-6110135IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.104.2E-5112134IPR000571Zinc finger, CCCH-type
SMARTSM003563.4E-5152179IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.24E-6152181IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.619152180IPR000571Zinc finger, CCCH-type
PfamPF006421.3E-9155179IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.6E-4158178IPR000571Zinc finger, CCCH-type
SMARTSM003565.7E-5314341IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.53314342IPR000571Zinc finger, CCCH-type
PfamPF006423.0E-9316341IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.18E-5317343IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.2E-4320342IPR000571Zinc finger, CCCH-type
SuperFamilySSF902294.58E-6359386IPR000571Zinc finger, CCCH-type
SMARTSM003561.3E-7360387IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.497360388IPR000571Zinc finger, CCCH-type
PfamPF006422.1E-8362386IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.104.5E-4365385IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0017148Biological Processnegative regulation of translation
GO:0005829Cellular Componentcytosol
GO:0010313Molecular Functionphytochrome binding
GO:0046872Molecular Functionmetal ion binding
GO:0048027Molecular FunctionmRNA 5'-UTR binding
Sequence ? help Back to Top
Protein Sequence    Length: 451 aa     Download sequence    Send to blast
MAAPSAGAGG GGGAAGEGSS SSAAAAAAAA TIGAHGVDQV AEAMWQMNLG EAVELGPYPE  60
RVGEPDCSYY MRTGMCRFGM TCKFNHPADR KLAVAAARMK GEYPQRSGQP ECQYYLKTGT  120
CKFGATCKFH HPREKAAMAT RVQLNELGYP FRPNEKECAY YLRTGQCKFG STCKFHHPQP  180
STMMVAVRGS GYSPGQSATS PGQHAYQGAV TSWPLSRSAS FIASPRWPGH SSYAQVIVPP  240
GLVQVPGWSP YTAQIGSSSS DDQQQTPGAA QYYTGSRQSG TPGMGDQGMF SSYQAGSVPV  300
GLYAVQRENV FPERPDQPEC QFYMKTGDCK FGAVCKFHHP RERIIPTPNC ALSSLGLPLR  360
PGEPICSFYS RYGMCKFGPN CKFDHPLGTV MFGHASSPTG EVPTSRRMLA HVPSHPEVSP  420
DSGSGRSRRI SHSDSQQIPP GERSTEREAS *
Cis-element ? help Back to Top
SourceLink
PlantRegMapSeita.8G116700.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0341780.0BT034178.1 Zea mays full-length cDNA clone ZM_BFc0032H13 mRNA, complete cds.
GenBankBT0608430.0BT060843.1 Zea mays full-length cDNA clone ZM_BFb0059K13 mRNA, complete cds.
GenBankBT0642190.0BT064219.1 Zea mays full-length cDNA clone ZM_BFc0149L04 mRNA, complete cds.
GenBankBT0857450.0BT085745.1 Zea mays full-length cDNA clone ZM_BFc0056E16 mRNA, complete cds.
GenBankEU9569840.0EU956984.1 Zea mays clone 1579587 zinc finger CCCH type domain-containing protein ZFN-like mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004979251.10.0zinc finger CCCH domain-containing protein 63 isoform X1
SwissprotQ2R4J40.0C3H63_ORYSJ; Zinc finger CCCH domain-containing protein 63
TrEMBLA0A368S6Q60.0A0A368S6Q6_SETIT; Uncharacterized protein
STRINGSi026440m0.0(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP115338132
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G02830.11e-151zinc finger protein 1
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]