PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Seita.8G105400.1.p
Organism
Setaria italica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
Family C2H2
Protein Properties Length: 263aa    MW: 28796.9 Da    PI: 9.1334
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Seita.8G105400.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H214.20.000137394223
                        EETTTTEEESSHHHHHHHHHHT CS
             zf-C2H2  2 kCpdCgksFsrksnLkrHirtH 23
                        +C++C+k+Fs+ + L rH  +H
  Seita.8G105400.1.p 73 VCTICNKTFSSYHALGRHKFVH 94
                        6*****************8777 PP
2zf-C2H211.80.00072120142123
                         EEETTTTEEESSHHHHHHHHHHT CS
             zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                         y+C +C++ F ++ +L rHi +H
  Seita.8G105400.1.p 120 YVCRKCSEKFLTRKSLGRHIHKH 142
                         9*******************999 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576674.36E-671142No hitNo description
SMARTSM003550.117294IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.4927299IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.609.5E-47398IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PfamPF139127.3E-67491IPR007087Zinc finger, C2H2
PROSITE patternPS0002807494IPR007087Zinc finger, C2H2
SMARTSM003550.11120142IPR015880Zinc finger, C2H2-like
PROSITE profilePS501579.473120142IPR007087Zinc finger, C2H2
PROSITE patternPS000280122142IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 263 aa     Download sequence    Send to blast
MDLVEMPMAH AWHQKHGTGT TDLPVSVACS SDAHSSGEKD EMREAAELFT TLVKRVRKET  60
VKEPSPPSVK TPVCTICNKT FSSYHALGRH KFVHNKQKNS LLGDGAGSSS GTGERCALKY  120
VCRKCSEKFL TRKSLGRHIH KHWREIFKMK QPSARRKNLK PPVPLACGTM QSSGPMVLPT  180
DESMQPPVLP TSANPPTPDF DAVQQQQLAN RLGNEIESSC STAPKILNDT GAALPAPKQI  240
SPAVKYAFDL NMFPHETDGW EP*
Cis-element ? help Back to Top
SourceLink
PlantRegMapSeita.8G105400.1.p
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A368S6B80.0A0A368S6B8_SETIT; Uncharacterized protein
STRINGPavir.Hb01284.1.p1e-61(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP2236947
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G27730.14e-06salt tolerance zinc finger