PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Seita.8G098900.1.p
Organism
Setaria italica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
Family WRKY
Protein Properties Length: 315aa    MW: 35033 Da    PI: 5.4993
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Seita.8G098900.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY66.44.4e-21123184259
                         --SS-EEEEEEE--TT-SS-EEEEEE-ST...T---EEEEEE.-SSSTTEEEEEEES--SS- CS
                WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa...gCpvkkkver.saedpkvveitYegeHnhe 59 
                         dDgy WrKYG K+++g++f+r+Y+rC+++   gC+++k++++ s++d  ++++tY++eH+++
  Seita.8G098900.1.p 123 DDGYIWRKYGEKKINGTHFTRNYFRCSYKydrGCQATKQIQQqSSNDLPIFQVTYNSEHTCN 184
                         8***************************99999*******86267899************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.805.6E-23109184IPR003657WRKY domain
SuperFamilySSF1182904.97E-20117185IPR003657WRKY domain
SMARTSM007743.3E-29122185IPR003657WRKY domain
PROSITE profilePS5081116.868123186IPR003657WRKY domain
PfamPF031067.9E-23123183IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 315 aa     Download sequence    Send to blast
MAYVPDRDGA MREVVQAYEL IKSHQPHFQF CDKEQGLETV NLAQSLLNEA LRALHLALSV  60
LNHETSTAGG GAEGSSRSHM LHLFSRSDAA GDVGAIMSQQ RRSKRRRSNE ETSQVILTDA  120
PHDDGYIWRK YGEKKINGTH FTRNYFRCSY KYDRGCQATK QIQQQSSNDL PIFQVTYNSE  180
HTCNCTTAAN KYIKIDVPRP HLSSCNPNGM ISPMADAMID QNQGVLPPLV EVSTVFFDST  240
SCQETSHLSR PYTLSLDHVG NHLTSTDDGA GDYNCGTIDA YIDLGQMVLP QEPLEDNPFS  300
DAELDLLCNS LMYN*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5w3x_B3e-141241811874Disease resistance protein RRS1
5w3x_D3e-141241811874Disease resistance protein RRS1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
199106QRRSKRRR
Cis-element ? help Back to Top
SourceLink
PlantRegMapSeita.8G098900.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004980389.11e-130probable WRKY transcription factor 30
TrEMBLA0A368S6550.0A0A368S655_SETIT; Uncharacterized protein
STRINGSi028270m0.0(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP50452663
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G11070.22e-17WRKY family protein