PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Seita.8G098500.1.p
Common NameSETIT_027328mg
Organism
Setaria italica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
Family WRKY
Protein Properties Length: 281aa    MW: 31541.1 Da    PI: 6.8947
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Seita.8G098500.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY63.83e-20113173359
                         -SS-EEEEEEE--TT-SS-EEEEEE-ST...T---EEEEEE.-SSSTTEEEEEEES--SS- CS
                WRKY   3 DgynWrKYGqKevkgsefprsYYrCtsa...gCpvkkkver.saedpkvveitYegeHnhe 59 
                         Dgy WrKYG K+++g++f r+Y+rC+++   gC+++k++++ s++d  ++++tY++eH+++
  Seita.8G098500.1.p 113 DGYVWRKYGEKNINGTHFKRHYFRCSYKydrGCQATKQIQQqSSNDLPMFQVTYSSEHTCN 173
                         9**************************99999*******86267899************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.805.3E-22101173IPR003657WRKY domain
SuperFamilySSF1182902.48E-19106174IPR003657WRKY domain
SMARTSM007748.3E-28111174IPR003657WRKY domain
PfamPF031062.1E-22113172IPR003657WRKY domain
PROSITE profilePS5081116.432113175IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 281 aa     Download sequence    Send to blast
MREVAQVYEL IKSHQPRLQF DDVQQLSATT NLAQSLLNNA LRALHLALCV MNPQTSAHCG  60
AESSSRSNRT HLFSPSAAAG DVGGITSQPK KGKRRRANEE TSRVILTEAP HIDGYVWRKY  120
GEKNINGTHF KRHYFRCSYK YDRGCQATKQ IQQQSSNDLP MFQVTYSSEH TCNCTTAANK  180
YIKSDLPQRS YCDNNGTISQ MGDAMIRPEQ GLLPPRAEGS TVFMDTMSWE EPFVLSNPYS  240
LSPNHAGYLM TSTDDGASDF HYESTDGYID LEHIWQLDLQ *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5w3x_B1e-141131701874Disease resistance protein RRS1
5w3x_D1e-141131701874Disease resistance protein RRS1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
18894PKKGKRR
Cis-element ? help Back to Top
SourceLink
PlantRegMapSeita.8G098500.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004980386.11e-167probable WRKY transcription factor 54
TrEMBLK3ZL720.0K3ZL72_SETIT; Uncharacterized protein
STRINGSi027328m0.0(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP50452663
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G56400.11e-17WRKY DNA-binding protein 70