PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Seita.8G098400.1.p
Common NameSETIT_027946mg
Organism
Setaria italica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
Family WRKY
Protein Properties Length: 304aa    MW: 33803.6 Da    PI: 6.2764
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Seita.8G098400.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY63.92.7e-20122183259
                         --SS-EEEEEEE--TT-SS-EEEEEE-ST...T---EEEEEE.-SSSTTEEEEEEES--SS- CS
                WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa...gCpvkkkver.saedpkvveitYegeHnhe 59 
                          Dgy WrKYG K+++g++f r+Y+rC+++   gC+++k++++ s++d  ++++tY++eH+++
  Seita.8G098400.1.p 122 TDGYVWRKYGEKNINGTHFKRHYFRCSYKydrGCQATKQIQQqSSNDLPMFQVTYNSEHTCN 183
                         7***************************99999*******86267899************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1182901.7E-19114184IPR003657WRKY domain
Gene3DG3DSA:2.20.25.804.3E-22114183IPR003657WRKY domain
PROSITE profilePS5081116.49116185IPR003657WRKY domain
SMARTSM007748.2E-28121184IPR003657WRKY domain
PfamPF031062.6E-22123182IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 304 aa     Download sequence    Send to blast
MACVPDRDSA MREVAQAYEL IKSHQPRLQF DDVQQLSATT NLAQSLLNNA MRALHLALCV  60
MNPQTSAHCG AESSSRSNRP HLFSPSAAAG DVGGITSQRK KGKRRRANEE TSWVILTEAP  120
HTDGYVWRKY GEKNINGTHF KRHYFRCSYK YDRGCQATKQ IQQQSSNDLP MFQVTYNSEH  180
TCNCTTAANT YIKSDLPQRS SCDNNGTISQ MGDAMIRQEQ GLLPPRAEGS TVFMDTMSWE  240
EPFVLSNLYS LSPNHAGYHT TSTDDGASDF HCGSTDGTYL VLPPEPIFED NPCIDAELDL  300
LYI*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5w3x_B2e-141231801874Disease resistance protein RRS1
5w3x_D2e-141231801874Disease resistance protein RRS1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapSeita.8G098400.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004980386.10.0probable WRKY transcription factor 54
TrEMBLK3ZMX40.0K3ZMX4_SETIT; Uncharacterized protein
STRINGSi027946m0.0(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP50452663
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G11070.11e-17WRKY family protein