PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Seita.8G098000.1.p
Common NameSETIT_028088mg
Organism
Setaria italica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
Family ERF
Protein Properties Length: 331aa    MW: 34875.8 Da    PI: 4.7455
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Seita.8G098000.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP2491.5e-15161210355
                 AP2   3 ykGVrwdkkrgrWvAeIrd.psengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                         + GVr ++ +g+++AeIrd    + k +r+++g+f+++e Aa a+++a+ + +g
  Seita.8G098000.1.p 161 FIGVRKRP-WGKFAAEIRDsT--R-KGARVWIGTFDSPEAAALAYDQAAFAARG 210
                         57******.**********32..2.24**********************99987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003803.7E-30160224IPR001471AP2/ERF domain
PROSITE profilePS5103221.167160218IPR001471AP2/ERF domain
PRINTSPR003674.5E-10161172IPR001471AP2/ERF domain
CDDcd000189.11E-17161219No hitNo description
SuperFamilySSF541712.75E-20161220IPR016177DNA-binding domain
PfamPF008471.0E-11161210IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.102.6E-26161218IPR001471AP2/ERF domain
PRINTSPR003674.5E-10200220IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 331 aa     Download sequence    Send to blast
MEQEHFTSYA SYHHPAPDPD LSPALDATQS DMLLQLKAFL LDGIDSEPPA EVCSGWSSPS  60
SSTVDVCSEM QAAMGPSTIR DHQHWSPGTV DTVDMPLDID AFLIGSNADA AAAEECSDWL  120
SPSSSTSSEV ANVSPSTPDV HQRPDAGTGP AASPGDKRQA FIGVRKRPWG KFAAEIRDST  180
RKGARVWIGT FDSPEAAALA YDQAAFAARG TTAVLNFPVE CVRESLGPLA LAGGAGCGSP  240
VLALKRRHSK RTRRRKVSPT GFSNSKSTLQ DLQPPAGQCS VVSGTAVDMP QQQATVSISQ  300
CPSGIVELDD LGDAYLEKLL RVVSSELGEH *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A6e-23146221475Ethylene-responsive transcription factor ERF096
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtMay act as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. Involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250, ECO:0000269|PubMed:11950980}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapSeita.8G098000.1.p
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Weakly induced by Pseudomonas syringae tomato (avirulent avrRpt2 strain), but also by mock inoculation. {ECO:0000269|PubMed:11950980}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_022685223.10.0ethylene-responsive transcription factor ERF094-like
SwissprotQ8VYM04e-40ERF93_ARATH; Ethylene-responsive transcription factor 15
TrEMBLA0A368S6690.0A0A368S669_SETIT; Uncharacterized protein
STRINGSi028088m0.0(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP2764845
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G31230.15e-25ethylene-responsive element binding factor 15
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Zhang H, et al.
    Arabidopsis AtERF15 positively regulates immunity against Pseudomonas syringae pv. tomato DC3000 and Botrytis cinerea.
    Front Plant Sci, 2015. 6: p. 686
    [PMID:26388886]