PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Seita.8G043200.1.p

Common Name

LOC101780231, SETIT_026391mg

Organism

Setaria italica

Taxonomic ID

4555

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria

Family

Trihelix

Protein Properties

Length: 435aa MW: 49674.6 Da PI: 6.5811

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Seita.8G043200.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	77.3	2.4e-24	115	211	1	86
trihelix 1 rWtkqevlaLiearremeerlrrgk..........lkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkr.tsessstcp 80 +Wt+++v++Li+a+++++++ +++ +kk++W+++sk+m er +++sp+qC++k+++lnkryk++ ++ +++ +++++++ Seita.8G043200.1.p 115 KWTDSMVKLLITAVSYTGDDHGADLgggrrnstimQKKGKWKAISKVMGERDCHVSPQQCEDKFNDLNKRYKRLIDILGRGtACDVVEKPE 205 7************99999998644445667788********************************************5599999999 PP trihelix 81 yfdqle 86 ++d+++ Seita.8G043200.1.p 206 LLDSMN 211 999997 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF13837	2.4E-19	113	237	No hit	No description

Sequence ? help Back to Top
Protein Sequence Length: 435 aa Download sequence Send to blast
MEGTNQPPGS RMQGAPFGSL DLHGNSMETH APNLGKQIFI NSQIPGTLTM NRASEPDDFP 60 GFQFKEDGRS DKNHHQHSHH SKNGLIDDEG HYMTEDATNT PSVKGKKASM WHRMKWTDSM 120 VKLLITAVSY TGDDHGADLG GGRRNSTIMQ KKGKWKAISK VMGERDCHVS PQQCEDKFND 180 LNKRYKRLID ILGRGTACDV VEKPELLDSM NHLSDKMKDD VKKLLNSKQL FFEEMCSYHN 240 NNRRKLPEDH ALQHSLLLAL RCKEDHDPLR DASGDADEDD QSADSDHEEN DDEEQHPVHT 300 NMREPSMDKR ARHGDAALLT SSSHEGIKRS DPHGITVDIN KAFPDGTNWA LLQQDLASQS 360 LEVRKRLLQI EEKNLELKKQ CVKWERFRKK KDREIERMAM ENEHMMIENK QLELELRQKE 420 LELELKLKGQ ANHA*

Sequence ? help Back to Top

Protein Sequence Length: 435 aa Download sequence Send to blast

MEGTNQPPGS RMQGAPFGSL DLHGNSMETH APNLGKQIFI NSQIPGTLTM NRASEPDDFP  60
GFQFKEDGRS DKNHHQHSHH SKNGLIDDEG HYMTEDATNT PSVKGKKASM WHRMKWTDSM  120
VKLLITAVSY TGDDHGADLG GGRRNSTIMQ KKGKWKAISK VMGERDCHVS PQQCEDKFND  180
LNKRYKRLID ILGRGTACDV VEKPELLDSM NHLSDKMKDD VKKLLNSKQL FFEEMCSYHN  240
NNRRKLPEDH ALQHSLLLAL RCKEDHDPLR DASGDADEDD QSADSDHEEN DDEEQHPVHT  300
NMREPSMDKR ARHGDAALLT SSSHEGIKRS DPHGITVDIN KAFPDGTNWA LLQQDLASQS  360
LEVRKRLLQI EEKNLELKKQ CVKWERFRKK KDREIERMAM ENEHMMIENK QLELELRQKE  420
LELELKLKGQ ANHA*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Seita.8G043200.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004978760.1	0.0	uncharacterized protein LOC101780231
Refseq	XP_004978761.1	0.0	uncharacterized protein LOC101780231
Refseq	XP_022684636.1	0.0	uncharacterized protein LOC101780231
Refseq	XP_022684637.1	0.0	uncharacterized protein LOC101780231
Refseq	XP_022684638.1	0.0	uncharacterized protein LOC101780231
TrEMBL	K3ZII9	0.0	K3ZII9_SETIT; Uncharacterized protein
STRING	Si026391m	0.0	(Setaria italica)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP2920	38	86

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G21200.1	4e-80	sequence-specific DNA binding transcription factors

Link Out ? help Back to Top
Phytozome	Seita.8G043200.1.p
Entrez Gene	101780231