PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Seita.8G013000.1.p
Common NameLOC101754029, SETIT_026670mg
Organism
Setaria italica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
Family WRKY
Protein Properties Length: 310aa    MW: 33603.7 Da    PI: 7.5214
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Seita.8G013000.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY681.4e-21126188259
                         --SS-EEEEEEE--TT-SS-EEEEEE-ST...T---EEEEEE-..SSSTTEEEEEEES--SS- CS
                WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa...gCpvkkkvers..aedpkvveitYegeHnhe 59 
                         +Dgy+WrKYG K+++g+ ++rsY+rCt++   gC ++k+v+++  ++dp ++++tY++ H+++
  Seita.8G013000.1.p 126 EDGYEWRKYGEKKINGTSYTRSYFRCTYKddtGCLATKHVQQKdcNSDPPMFQVTYNNGHTCK 188
                         7***************************99999*******98622689*************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.801.8E-22119189IPR003657WRKY domain
SuperFamilySSF1182902.75E-20119188IPR003657WRKY domain
SMARTSM007741.7E-30125189IPR003657WRKY domain
PfamPF031061.0E-22126188IPR003657WRKY domain
PROSITE profilePS5081117.155126185IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 310 aa     Download sequence    Send to blast
MGEGAVREVA QVYERIKIQH PLLLHYSSSH HHQPTTQLAH NLLSDALRAL NLALSVMKQH  60
PAAAAGSVTP RIVQAAEPQI SPPSPASADP QAIVTSTARS GKRRRSSVML EGKKSSWVNF  120
TTVPYEDGYE WRKYGEKKIN GTSYTRSYFR CTYKDDTGCL ATKHVQQKDC NSDPPMFQVT  180
YNNGHTCKNF TTTTAANNNS GSSNNLALIG CCNSSEGVTK ISSRNNGHAG AAMNNIKQEQ  240
PPVLLPPILE ISALPFDGKP PSMTSSCISG ESWDEYSAGD MAQIAEASAG DDLLYDPELF  300
VLCTSFKVY*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6ir8_A4e-14126188969OsWRKY45
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapSeita.8G013000.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004978526.10.0probable WRKY transcription factor 54
TrEMBLK3ZJB70.0K3ZJB7_SETIT; Uncharacterized protein
STRINGSi026670m0.0(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP50452663
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G40750.12e-17WRKY DNA-binding protein 54