PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Seita.8G012700.1.p
Organism
Setaria italica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
Family WRKY
Protein Properties Length: 271aa    MW: 30946.9 Da    PI: 6.5696
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Seita.8G012700.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY59.37.7e-19123186359
                         -SS-EEEEEEE--TT-SS-EEEEEE-ST...T---EEEEEE-SSSTT....EEEEEEES--SS- CS
                WRKY   3 DgynWrKYGqKevkgsefprsYYrCtsa...gCpvkkkversaedpk....vveitYegeHnhe 59 
                         Dgy+WrKYGqK + +++++rsYYrC+ +   gC ++k v+++++d++    ++++ Y g+H ++
  Seita.8G012700.1.p 123 DGYQWRKYGQKWISKAKHSRSYYRCANSkgqGCLATKTVQQKETDGSgtvrLFDVDYYGQHICK 186
                         9*************************988889************9853333789*******987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.803.0E-21107186IPR003657WRKY domain
SuperFamilySSF1182905.75E-19115186IPR003657WRKY domain
SMARTSM007747.1E-27121187IPR003657WRKY domain
PROSITE profilePS5081115.95123179IPR003657WRKY domain
PfamPF031061.4E-20123186IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 271 aa     Download sequence    Send to blast
MNILESSTHS SRQVAINEIE HQRALMMDLH DLILPILDTH SGQAKLVQQL FQDIFNSSSK  60
VISFLELGDN SEKQANLIKY KRKHGKNNME SHILEEETKE IGNKRRKNAE HIGSVVTQAP  120
YFDGYQWRKY GQKWISKAKH SRSYYRCANS KGQGCLATKT VQQKETDGSG TVRLFDVDYY  180
GQHICKKDGI IHPYVVETTC HSVPIVNHNQ SSISTFVNND VHGIQDENYE NLFMVPDMPE  240
CLKDLTDTEM ERALELTCMN LPLISEDIWA *
Cis-element ? help Back to Top
SourceLink
PlantRegMapSeita.8G012700.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004978523.10.0probable WRKY transcription factor 62
TrEMBLA0A368S3B40.0A0A368S3B4_SETIT; Uncharacterized protein
STRINGSi027360m0.0(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP133251529
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G46400.12e-17WRKY DNA-binding protein 46