PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Seita.7G302500.1.p | ||||||||
Common Name | LOC101774144, SETIT_010813mg | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
|
||||||||
Family | WRKY | ||||||||
Protein Properties | Length: 275aa MW: 29751.6 Da PI: 4.8027 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 65 | 1.2e-20 | 76 | 139 | 3 | 58 |
-SS-EEEEEEE--TT-SS-EEEEEE-ST...T---EEEEEE-SSSTT.....EEEEEEES--SS CS WRKY 3 DgynWrKYGqKevkgsefprsYYrCtsa...gCpvkkkversaedpk.....vveitYegeHnh 58 Dgy+WrKYGqK+++g+ ++rsYYrCt + gCp+k+ v+r+++ + +++ geH++ Seita.7G302500.1.p 76 DGYRWRKYGQKQIEGAMYARSYYRCTRSaeqGCPAKRTVQRNDDGDNggaapKYTVVCMGEHTC 139 9*************************988889*********99432211111345555666665 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.20.25.80 | 1.4E-21 | 60 | 140 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 1.57E-19 | 69 | 140 | IPR003657 | WRKY domain |
SMART | SM00774 | 6.0E-24 | 74 | 141 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 17.913 | 76 | 117 | IPR003657 | WRKY domain |
Pfam | PF03106 | 3.8E-22 | 76 | 139 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 275 aa Download sequence Send to blast |
MTLDLQGDEL LLAQLRELLS PSSPAVKAVE SCDGRRRRRR GSKRAQDDDN TTNNGKRRSK 60 KQKSTSSFVT SVPDFDGYRW RKYGQKQIEG AMYARSYYRC TRSAEQGCPA KRTVQRNDDG 120 DNGGAAPKYT VVCMGEHTCT ATDSLEAPVI LETTAVVAPG IIGTNNRPDE DDNDDTFTSA 180 GSTTTTGTGV ESPAISDITW SSSSCGGDYV VDDYGAGLFD VHDSWASSAS LQEMEDFTGP 240 IRSPVHVPAD GWTIDHFLLQ LANNEPVSHF SSAC* |
Nucleic Localization Signal ? help Back to Top | |||
---|---|---|---|
No. | Start | End | Sequence |
1 | 34 | 39 | RRRRRR |
2 | 37 | 62 | RRRGSKRAQDDDNTTNNGKRRSKKQK |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | Seita.7G302500.1.p |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | KU058620 | 1e-85 | KU058620.1 UNVERIFIED: Panicum miliaceum WRKY3-like gene, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_004977390.1 | 0.0 | probable WRKY transcription factor 58 | ||||
TrEMBL | K3Y9C1 | 0.0 | K3Y9C1_SETIT; Uncharacterized protein | ||||
STRING | Si010813m | 0.0 | (Setaria italica) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP5760 | 30 | 58 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT2G40750.1 | 2e-14 | WRKY DNA-binding protein 54 |
Link Out ? help Back to Top | |
---|---|
Phytozome | Seita.7G302500.1.p |
Entrez Gene | 101774144 |