PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Seita.7G302400.1.p
Common NameLOC101773736, SETIT_010764mg
Organism
Setaria italica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
Family WRKY
Protein Properties Length: 288aa    MW: 32496.8 Da    PI: 6.7136
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Seita.7G302400.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY60.43.3e-19138202359
                         -SS-EEEEEEE--TT-SS-EEEEEE-ST...T---EEEEEE-SS.....STTEEEEEEES--SS- CS
                WRKY   3 DgynWrKYGqKevkgsefprsYYrCtsa...gCpvkkkversae.....dpkvveitYegeHnhe 59 
                         Dg +WrKYGqK+++++++prsYYrCt++   +C+++k v+++++      p + +++Y+g+H+++
  Seita.7G302400.1.p 138 DGRQWRKYGQKHINKAKHPRSYYRCTYRqeqDCKATKTVQQQDDsagtdHPVMYTVVYHGQHTCK 202
                         999************************98899********987422221467999********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.805.3E-21129202IPR003657WRKY domain
SuperFamilySSF1182902.22E-20131202IPR003657WRKY domain
SMARTSM007744.6E-28136203IPR003657WRKY domain
PfamPF031067.0E-23138202IPR003657WRKY domain
PROSITE profilePS5081114.183138178IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 288 aa     Download sequence    Send to blast
MKHHNSRYLP QSSPSDHPSF VSDHRSAMKE IARGQSLVTQ LRAIVLPALQ ADQRCELVAQ  60
MFQNILDCSS KAITELQLHH QSNARADDAL VDDKKRVRRI SSDDCIKEEG ATANLHHQHK  120
RRKSDDLVSL ETPVPHYDGR QWRKYGQKHI NKAKHPRSYY RCTYRQEQDC KATKTVQQQD  180
DSAGTDHPVM YTVVYHGQHT CKDNNGVESG TDDSETNTQG SSDSRSSIST TCTDAYEHQT  240
SLDDNKPLDK SADLITKNCM YEPFDMSAFA PSDSDSWELD ALLRFGA*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6ir8_A1e-141382021069OsWRKY45
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapSeita.7G302400.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004977389.10.0probable WRKY transcription factor 63
TrEMBLK3Y9720.0K3Y972_SETIT; Uncharacterized protein
STRINGSi010764m0.0(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP32583079
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G56400.13e-21WRKY DNA-binding protein 70