PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Seita.7G301900.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
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Family | WRKY | ||||||||
Protein Properties | Length: 173aa MW: 19112 Da PI: 6.093 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 62.8 | 6.2e-20 | 12 | 69 | 6 | 59 |
-EEEEEEE--TT-SS-EEEEEE-ST...T---EEEEEE-.SSSTTEEEEEEES--SS- CS WRKY 6 nWrKYGqKevkgsefprsYYrCtsa...gCpvkkkvers.aedpkvveitYegeHnhe 59 +WrKYG K+++g+ ++rsY+rCt++ gC ++k+v+++ ++d ++++tY+++H+++ Seita.7G301900.1.p 12 RWRKYGEKKINGTSYTRSYFRCTYKddtGCLATKHVQQKdSSDHPMFQVTYHNNHTCN 69 8***********************99999*******875167999***********97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50811 | 16.26 | 2 | 66 | IPR003657 | WRKY domain |
Gene3D | G3DSA:2.20.25.80 | 8.8E-20 | 8 | 69 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 4.71E-18 | 10 | 69 | IPR003657 | WRKY domain |
SMART | SM00774 | 5.4E-25 | 12 | 70 | IPR003657 | WRKY domain |
Pfam | PF03106 | 5.0E-21 | 12 | 68 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 173 aa Download sequence Send to blast |
MVAREIDLEE KRWRKYGEKK INGTSYTRSY FRCTYKDDTG CLATKHVQQK DSSDHPMFQV 60 TYHNNHTCNN CTKNNTTPAN NSSKGAAMNI KQEPPAVAVL PPTLVEAYSD LPSFDQDQTP 120 PCQQAEPSPF PIGMQQPWCG TATSSSTTSS CISGESCDEY SASAAETWRQ PN* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Seita.7G301900.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025805829.1 | 3e-43 | WRKY transcription factor 55-like | ||||
TrEMBL | A0A368S1L5 | 1e-127 | A0A368S1L5_SETIT; Uncharacterized protein | ||||
STRING | Si026670m | 3e-38 | (Setaria italica) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP27829 | 3 | 4 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G40750.1 | 3e-12 | WRKY DNA-binding protein 54 |
Link Out ? help Back to Top | |
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Phytozome | Seita.7G301900.1.p |