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Plant Transcription
Factor Database
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Transcription Factor Information
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Basic
Information? help
Back to Top |
| TF ID |
Seita.7G294300.1.p |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
|
| Family |
GRAS |
| Protein Properties |
Length: 503aa MW: 54334.3 Da PI: 4.5963 |
| Description |
GRAS family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Seita.7G294300.1.p | genome | JGI | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | GRAS | 182.3 | 3.5e-56 | 142 | 500 | 2 | 374 |
GRAS 2 velLlecAeavssgdlelaqalLarlsel......aspdgd.......pmqRlaayfteALaarlarsvselykalppsetseknsseela 79
+lL++ A+av+s+d a+a+L+rl +l + + p la yf+++L++r+++ + + ++ ++ ++++
Seita.7G294300.1.p 142 SDLLVAGARAVASQDSISASAILSRLDDLipgvpyR----SchhaaasPSDHLACYFARGLRSRISGAR--TERHAAAAPA----PENRMP 222
679************************998754442....233334449******************33..3333333333....356899 PP
GRAS 80 alklfsevsPilkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleet.gerLak 167
a+++++e+sP++kf+h+taNqaIlea++ + vH++D+++++G+QW++L+ La ++p +l T+v+ ++ ++ + + + ++ L++
Seita.7G294300.1.p 223 AYRMLQELSPFIKFAHFTANQAILEATADDPGVHVVDLNVGEGVQWASLMSDLARHGGKPFHL--TAVVTAAGAesHTASSHPMaARWLSE 311
******************************************************875555555..66555443344444444450566*** PP
GRAS 168 fAeelgvpfefnvlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqe...adhnsesFle 255
fAe+l++p+ dl+ + + + g +++V++ ++ sl + ++L vk l Pk+v+++eqe + ++ ++F+e
Seita.7G294300.1.p 312 FAESLNLPLPE---------DLHGFTASGNGGGSVIVSCDTTDKSYS----SLIRLQMQLLGSVKILHPKLVILIEQElfrIGRSPAPFAE 389
*******9853.........34444556678********99544443....44445569*******************5444556679*** PP
GRAS 256 rflealeyysalfdsleaklpres..eerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkv 344
f+e l++++a+++sle+ + vE+e lg+ ++++v + g+ + + e GF++ +ls++++ q k+l +
Seita.7G294300.1.p 390 FFCEVLQHFAAMLESLESCFCDGGygACLGLVEKETLGPMVEDAVGQYGSL----TG-----GAGAELEGFRTCELSSFNVVQGKMLAGLF 471
****************999988877788899*******************8....22.....3456889********************** PP
GRAS 345 ksdgyrveeesgslvlgWkdrpLvsvSaWr 374
+ +g+ v +e+g l l+W++rpL+svS+Wr
Seita.7G294300.1.p 472 G-RGFGVVQEEGRLALCWNSRPLTSVSVWR 500
*.***************************8 PP
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| Gene Ontology ? help Back to Top |
| GO Term |
GO Category |
GO Description |
| GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
| Sequence ? help Back to Top |
| Protein Sequence Length: 503 aa
Download sequence Send
to blast |
MVLTLLPPDC VHKLYETTGS SNQFFLSEDI SQMETMSYPC SPLIPFPTQH EESSYLLWSP 60
QVLIPLSLEN GDGDADPSSD HHQQQDHEVM DMLIQEANRL PLQDELSNGD PLFTGFDQRR 120
EGQENGSLLA VQEEFMAESS LSDLLVAGAR AVASQDSISA SAILSRLDDL IPGVPYRSCH 180
HAAASPSDHL ACYFARGLRS RISGARTERH AAAAPAPENR MPAYRMLQEL SPFIKFAHFT 240
ANQAILEATA DDPGVHVVDL NVGEGVQWAS LMSDLARHGG KPFHLTAVVT AAGAESHTAS 300
SHPMAARWLS EFAESLNLPL PEDLHGFTAS GNGGGSVIVS CDTTDKSYSS LIRLQMQLLG 360
SVKILHPKLV ILIEQELFRI GRSPAPFAEF FCEVLQHFAA MLESLESCFC DGGYGACLGL 420
VEKETLGPMV EDAVGQYGSL TGGAGAELEG FRTCELSSFN VVQGKMLAGL FGRGFGVVQE 480
EGRLALCWNS RPLTSVSVWR PV*
|
| Annotation --
Nucleotide ? help
Back to Top |
| Source |
Hit ID |
E-value |
Description |
| GenBank | AL713906 | 4e-59 | AL713906.3 Oryza sativa chromosome 12, . BAC OJ1587_D05 of library Monsanto from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence. |
| GenBank | AP014968 | 4e-59 | AP014968.1 Oryza sativa Japonica Group DNA, chromosome 12, cultivar: Nipponbare, complete sequence. |
