PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Seita.7G293700.1.p

Common Name

LOC101777650, SETIT_010102mg

Organism

Setaria italica

Taxonomic ID

4555

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria

Family

Trihelix

Protein Properties

Length: 447aa MW: 51032.7 Da PI: 6.6787

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Seita.7G293700.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	75.8	7.2e-24	118	212	1	85
trihelix 1 rWtkqevlaLiearremeerlrrgk.........lkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkr.tsessstcpy 81 +Wt+++v++Li+a ++++e+ ++++ +kk++W+++sk+m +rg+ +sp+qC++k+++lnkryk++++ +++ t++ + + + Seita.7G293700.1.p 118 KWTDSMVKLLITAASYTGEDPGADSggrrncammQKKGKWKAISKVMGQRGCLVSPQQCEDKFNDLNKRYKRLTDLLGRGtTCRIVANPEL 208 7*******************986677788999*******************************************967999988888 PP trihelix 82 fdql 85 +d++ Seita.7G293700.1.p 209 LDSM 212 8888 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF13837	3.4E-18	116	239	No hit	No description

Sequence ? help Back to Top
Protein Sequence Length: 447 aa Download sequence Send to blast
MEGNNLPSGS LMQGTNYGSL DLHHNHMQMH APNSGNQGFN HSQMPSNFPI HLNQVTDSDQ 60 LSEFQFGEHG KANHHHQHHN QQHTKISMSD DEEHGVNEDA TDSQTGKGKK GSAWHRMKWT 120 DSMVKLLITA ASYTGEDPGA DSGGRRNCAM MQKKGKWKAI SKVMGQRGCL VSPQQCEDKF 180 NDLNKRYKRL TDLLGRGTTC RIVANPELLD SMANLSDKTK DDARKILSSK HLFYEEMCSY 240 HNNNRFSLPE DPALQRSLQL ALKCKDEHDT RRRASGDADE DDQSADTDYE EENDDEHPVV 300 HVNKGTLPVH KRMRYMADQE DVGFGNSSSS HDCSRRSDPL SITVDINKVF PDGTNLALVQ 360 KDLATQSAEI EKQRMEIEAE ALELAKQRHK WERFSKKKDR ELEKMRLENE QMKIENRRLE 420 LEVRHKELEL ELRLKGNRSQ AWHDNI*

Sequence ? help Back to Top

Protein Sequence Length: 447 aa Download sequence Send to blast

MEGNNLPSGS LMQGTNYGSL DLHHNHMQMH APNSGNQGFN HSQMPSNFPI HLNQVTDSDQ  60
LSEFQFGEHG KANHHHQHHN QQHTKISMSD DEEHGVNEDA TDSQTGKGKK GSAWHRMKWT  120
DSMVKLLITA ASYTGEDPGA DSGGRRNCAM MQKKGKWKAI SKVMGQRGCL VSPQQCEDKF  180
NDLNKRYKRL TDLLGRGTTC RIVANPELLD SMANLSDKTK DDARKILSSK HLFYEEMCSY  240
HNNNRFSLPE DPALQRSLQL ALKCKDEHDT RRRASGDADE DDQSADTDYE EENDDEHPVV  300
HVNKGTLPVH KRMRYMADQE DVGFGNSSSS HDCSRRSDPL SITVDINKVF PDGTNLALVQ  360
KDLATQSAEI EKQRMEIEAE ALELAKQRHK WERFSKKKDR ELEKMRLENE QMKIENRRLE  420
LEVRHKELEL ELRLKGNRSQ AWHDNI*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Seita.7G293700.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	EU952198	0.0	EU952198.1 Zea mays clone 1220044 hypothetical protein mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012703139.1	0.0	uncharacterized protein LOC101777650
Refseq	XP_012703140.1	0.0	uncharacterized protein LOC101777650
Refseq	XP_022684365.1	0.0	uncharacterized protein LOC101777650
TrEMBL	K3Y7B3	0.0	K3Y7B3_SETIT; Uncharacterized protein
STRING	Si010104m	0.0	(Setaria italica)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP2920	38	86

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G21200.1	1e-104	sequence-specific DNA binding transcription factors

Link Out ? help Back to Top
Phytozome	Seita.7G293700.1.p
Entrez Gene	101777650