PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Seita.7G288200.1.p

Organism

Setaria italica

Taxonomic ID

4555

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria

Family

TCP

Protein Properties

Length: 309aa MW: 32379.4 Da PI: 6.1377

Description

TCP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Seita.7G288200.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	TCP	126.6	2.6e-39	2	141	7	129
TCP 7 rhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec.eaesssssasnsssg........ 88 +++++hTkv+gR+RR+R++a+caar+F+L++eLG+++d++tieWLlqqa+pai ++tgt++++a+ + + s +s a++ + Seita.7G288200.1.p 2 PSKDRHTKVDGRGRRIRMPALCAARVFQLTRELGHKSDGETIEWLLQQAEPAILAATGTGTIPANYSsLNISIRSGAAAAA-Npsraapfp 91 68**************************************************************66632222222222222.234223333 PP TCP 89 ......kaaksaakskksqksaasalnlakesr................akarararertrek 129 + +++aa ++++ s + +a r+r re+ Seita.7G288200.1.p 92 alalhpH-----------HHQAA--AAPHDMSAmmgyhhhllppqqqdpSAGDAYMRKRYRED 141 3322220...........22222..22222222222333333443333333333344444444 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03634	2.2E-36	3	140	IPR005333	Transcription factor, TCP
PROSITE profile	PS51369	28.31	3	57	IPR017887	Transcription factor TCP subgroup

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0001047	Molecular Function	core promoter binding

Sequence ? help Back to Top
Protein Sequence Length: 309 aa Download sequence Send to blast
RPSKDRHTKV DGRGRRIRMP ALCAARVFQL TRELGHKSDG ETIEWLLQQA EPAILAATGT 60 GTIPANYSSL NISIRSGAAA AANPSRAAPF PALALHPHHH QAAAAPHDMS AMMGYHHHLL 120 PPQQQDPSAG DAYMRKRYRE DLFKEDDDRQ DPSAPKAREQ QAAATPPPPS AAMWAVGPNA 180 AAPSGGFWML PVSASSAAAA RPTEQPMWSF SGGGGGTGTV QAPLQFMSRA SYPSTAAAGG 240 GGGGMADTNI GMLAALNAYN RGGSEEQQQH QQPEGEQQHG GDGGGNDEED DDDSGEENHG 300 NNSSHCWG*

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription activator. Binds the promoter core sequence 5'-GGNCC-3'. {ECO:0000269\|PubMed:12000681}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Seita.7G288200.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	KJ726951	0.0	KJ726951.1 Zea mays clone pUT3645 TCP transcription factor (TCP12) mRNA, partial cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004977266.1	0.0	transcription factor PCF3
Swissprot	Q53PH2	2e-72	PCF3_ORYSJ; Transcription factor PCF3
TrEMBL	A0A368S0S6	0.0	A0A368S0S6_SETIT; Uncharacterized protein (Fragment)
STRING	Si010765m	0.0	(Setaria italica)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP4934	26	52

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G72010.1	4e-47	TCP family protein

Link Out ? help Back to Top
Phytozome	Seita.7G288200.1.p