PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Seita.7G268200.1.p

Common Name

SETIT_012328mg

Organism

Setaria italica

Taxonomic ID

4555

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria

Family

GRAS

Protein Properties

Length: 607aa MW: 68412.2 Da PI: 6.548

Description

GRAS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Seita.7G268200.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GRAS	278.7	1.7e-85	237	600	11	373
GRAS 11 avssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshltaNqa 101 av+++d a++lL++++ +as++gd +qRla++f+++L+arl++++s++ + ++ + + +++e l+a++l+ ++ + ++ l + Seita.7G268200.1.p 237 AVAANDDMTARELLKQIKRHASETGDVTQRLAQCFAKGLEARLVGMGSQVWQLRTADRLR-PTTVEFLKAHNLLTAACSFNRVVLLFSTMT 326 8999********************************************9766665555.678999******************** PP GRAS 102 IleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvakrledle 190 Il+a+ g+ r+Hi+D+++ +G++W+ Ll+ LasR++gpp++++T++g+p+ s e++ee+g rL+k A+e+gvpf+f + + k++e+++ Seita.7G268200.1.p 327 ILQAMVGKGRLHIVDYGMHHGFHWADLLRLLASREGGPPKVKVTAIGHPDLRpcSIEQIEEIGYRLSKCAHEFGVPFNFYA-IRKKWEEVS 416 ********************************************999899***********************.7**** PP GRAS 191 leeLrvkpgEalaVnlvlqlhrlldesvsles..erdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpres 279 +e+L+++ gE+l+Vn +l+ +l+des ++ +++ vL+ +++++P v++ + ++++ ++s+l rf e + y+sa+fd+++a++pr+s Seita.7G268200.1.p 417 IEDLNTDAGEVLIVNDHLNFNTLMDESIFFDDpsPKNIVLHNIRKMRPAVFIQSIVNSSY-GASYLSRFREVVFYFSAIFDMFDATIPRDS 506 ***********************97777558899****************99.789*********************** PP GRAS 280 eerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsv 370 + r+++E+ l+g + n++aceg++r++r e++++W++r ++aG++++pl+ ++++ k + +++ + + + e+ ++l+ gW++r L++ Seita.7G268200.1.p 507 KCRVVLEQDLFGCFALNAIACEGTDRINRPEKYKQWHARNQRAGLRQLPLEPSIVNALKDEVMRCYHRDFLICEDGQWLLHGWMGRILFAQ 597 **************************************************************999****************** PP GRAS 371 SaW 373 S W Seita.7G268200.1.p 598 STW 600 * PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50985	46.549	201	581	IPR005202	Transcription factor GRAS
Pfam	PF03514	5.9E-83	237	600	IPR005202	Transcription factor GRAS

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated

Sequence ? help Back to Top
Protein Sequence Length: 607 aa Download sequence Send to blast
MATTPDELFV EGLTEMSPQS PSVFLDVFSP KPDDRSEGCH HVPSDMMLPY ISRMLMEDDI 60 DDKPADHPAL LQVQQPFAQI LSSPSFGSNH GDTEGANDLL QDSSGDERTL HLALSKGTFA 120 VGAFLKGMKE ANMLLPIANN GFRRDELVNQ MVSESSNHSG AKKRYARDDH IEEGEARRTS 180 KSLMRIKEPK DICAHEMLDD MMLRGTEPCI IRCMEKLRIA MANGTEKTTR KGSRNAAVAA 240 NDDMTARELL KQIKRHASET GDVTQRLAQC FAKGLEARLV GMGSQVWQLR TADRLRPTTV 300 EFLKAHNLLT AACSFNRVVL LFSTMTILQA MVGKGRLHIV DYGMHHGFHW ADLLRLLASR 360 EGGPPKVKVT AIGHPDLRPC SIEQIEEIGY RLSKCAHEFG VPFNFYAIRK KWEEVSIEDL 420 NTDAGEVLIV NDHLNFNTLM DESIFFDDPS PKNIVLHNIR KMRPAVFIQS IVNSSYGASY 480 LSRFREVVFY FSAIFDMFDA TIPRDSKCRV VLEQDLFGCF ALNAIACEGT DRINRPEKYK 540 QWHARNQRAG LRQLPLEPSI VNALKDEVMR CYHRDFLICE DGQWLLHGWM GRILFAQSTW 600 VADDTS*

Sequence ? help Back to Top

Protein Sequence Length: 607 aa Download sequence Send to blast

MATTPDELFV EGLTEMSPQS PSVFLDVFSP KPDDRSEGCH HVPSDMMLPY ISRMLMEDDI  60
DDKPADHPAL LQVQQPFAQI LSSPSFGSNH GDTEGANDLL QDSSGDERTL HLALSKGTFA  120
VGAFLKGMKE ANMLLPIANN GFRRDELVNQ MVSESSNHSG AKKRYARDDH IEEGEARRTS  180
KSLMRIKEPK DICAHEMLDD MMLRGTEPCI IRCMEKLRIA MANGTEKTTR KGSRNAAVAA  240
NDDMTARELL KQIKRHASET GDVTQRLAQC FAKGLEARLV GMGSQVWQLR TADRLRPTTV  300
EFLKAHNLLT AACSFNRVVL LFSTMTILQA MVGKGRLHIV DYGMHHGFHW ADLLRLLASR  360
EGGPPKVKVT AIGHPDLRPC SIEQIEEIGY RLSKCAHEFG VPFNFYAIRK KWEEVSIEDL  420
NTDAGEVLIV NDHLNFNTLM DESIFFDDPS PKNIVLHNIR KMRPAVFIQS IVNSSYGASY  480
LSRFREVVFY FSAIFDMFDA TIPRDSKCRV VLEQDLFGCF ALNAIACEGT DRINRPEKYK  540
QWHARNQRAG LRQLPLEPSI VNALKDEVMR CYHRDFLICE DGQWLLHGWM GRILFAQSTW  600
VADDTS*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5b3g_A	3e-30	237	601	29	379	Protein SCARECROW
5b3h_A	3e-30	237	601	28	378	Protein SCARECROW
5b3h_D	3e-30	237	601	28	378	Protein SCARECROW
Search in ModeBase

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Seita.7G268200.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004978277.1	0.0	scarecrow-like protein 33
TrEMBL	A0A368S031	0.0	A0A368S031_SETIT; Uncharacterized protein
STRING	Si012328m	0.0	(Setaria italica)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP231	31	297

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G29060.1	1e-100	GRAS family protein

Link Out ? help Back to Top
Phytozome	Seita.7G268200.1.p