PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Seita.7G225800.1.p

Common Name

LOC101776551, SETIT_010820mg

Organism

Setaria italica

Taxonomic ID

4555

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria

Family

Trihelix

Protein Properties

Length: 274aa MW: 31854.6 Da PI: 8.0882

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Seita.7G225800.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	76.9	3.2e-24	20	102	1	86
trihelix 1 rWtkqevlaLiearremeerlrr.gklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 +W qe+++Li+ar e+e++ + ++++k+ We+v++++rerg++r++ qCk+kw+nl +ryk ++++ ++ ++cp+f++l+ Seita.7G225800.1.p 20 QWGAQETRELIAARGEVEREADAaRRSAKTMWEAVAARLRERGYRRTADQCKCKWKNLVNRYKGKETSDPEN----GRQCPFFEELH 102 7******************9735799********************************99999974....678****98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
CDD	cd12203	1.80E-16	19	85	No hit	No description
Gene3D	G3DSA:1.10.10.60	5.0E-4	20	79	IPR009057	Homeodomain-like
Pfam	PF13837	3.0E-22	20	103	No hit	No description
PROSITE profile	PS50090	7.433	21	78	IPR017877	Myb-like domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005730	Cellular Component	nucleolus
GO:0016592	Cellular Component	mediator complex
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 274 aa Download sequence Send to blast
MMEAGGGGAG AGGRDERVPQ WGAQETRELI AARGEVEREA DAARRSAKTM WEAVAARLRE 60 RGYRRTADQC KCKWKNLVNR YKGKETSDPE NGRQCPFFEE LHAVFTERAR NMQRQLLESE 120 SGASVKRKLK RPSGDRSSGE SGDDDDGGEE SEDEKPIHSR KRKADDKKQQ SQRMLEKSRT 180 GVSNIHELLQ DFLAQQQRID IQWQEMMEKR ANERVVFEQE WRQSMQKLEH ERLMLEHSWI 240 QREEQRRMRE EARADKRDAL LTTLLNKLLQ EDL*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Seita.7G225800.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004976700.1	0.0	trihelix transcription factor GT-3b
TrEMBL	K3Y9C8	0.0	K3Y9C8_SETIT; Uncharacterized protein
STRING	Si010820m	0.0	(Setaria italica)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP10688	30	37

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G38250.1	8e-29	Trihelix family protein

Link Out ? help Back to Top
Phytozome	Seita.7G225800.1.p
Entrez Gene	101776551