PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Seita.7G201600.2.p | ||||||||
Common Name | SETIT_011884mg | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
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Family | G2-like | ||||||||
Protein Properties | Length: 303aa MW: 32292.7 Da PI: 9.7631 | ||||||||
Description | G2-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | G2-like | 97.8 | 7.7e-31 | 20 | 73 | 2 | 55 |
G2-like 2 prlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 pr+rWt +LH++Fv+a+e LGG++kAtPk il++m+ kgLt++hvkSHLQ+YR Seita.7G201600.2.p 20 PRMRWTADLHRSFVRAIECLGGQDKATPKLILQFMGAKGLTISHVKSHLQMYRA 73 9****************************************************6 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 9.471 | 16 | 76 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 3.1E-29 | 16 | 74 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 1.16E-15 | 17 | 73 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 5.2E-23 | 20 | 73 | IPR006447 | Myb domain, plants |
Pfam | PF00249 | 1.2E-7 | 21 | 72 | IPR001005 | SANT/Myb domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 303 aa Download sequence Send to blast |
MGGGGGRNGA VRQYIRSKEP RMRWTADLHR SFVRAIECLG GQDKATPKLI LQFMGAKGLT 60 ISHVKSHLQM YRAARLGAGR RGMQAAQLQR RHSCAGDEQG PKEFLCPPLK RARMGTAVAY 120 ESMQGSHRIS EARTAAAAAA AGSLYCIDDY MQAMATRRRI KEEGLRWQRR DAAAAASSLQ 180 AVGCLVQESD PFKISRPEAN HLVLVPNQKQ GSVEDGNGNG CSLFGSFSTA AKDKPPEQCS 240 LSLSLGLDPN CTRAMAASSP SESSCILTAS PARRSSSDCS GHSDRFAGPG LSLELSLSTC 300 GF* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
6j4r_A | 2e-17 | 21 | 75 | 3 | 57 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_B | 2e-17 | 21 | 75 | 3 | 57 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_C | 2e-17 | 21 | 75 | 3 | 57 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_D | 2e-17 | 21 | 75 | 3 | 57 | Protein PHOSPHATE STARVATION RESPONSE 1 |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Seita.7G201600.2.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_022683888.1 | 0.0 | protein PHR1-LIKE 3 isoform X2 | ||||
TrEMBL | A0A368RXV3 | 0.0 | A0A368RXV3_SETIT; Uncharacterized protein | ||||
STRING | Si011884m | 0.0 | (Setaria italica) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G14600.1 | 1e-26 | G2-like family protein |
Link Out ? help Back to Top | |
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Phytozome | Seita.7G201600.2.p |