PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Seita.7G195400.1.p | ||||||||
Common Name | SETIT_000845mg | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
|
||||||||
Family | bHLH | ||||||||
Protein Properties | Length: 569aa MW: 62238.3 Da PI: 4.9145 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 41.8 | 1.9e-13 | 375 | 422 | 3 | 55 |
HHHHHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS HLH 3 rahnerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55 ++h + Er+RR+++N+ f L++l+P+ K++Ka+iL +++ Y+k+Lq Seita.7G195400.1.p 375 KNHVMSERKRREKLNEMFLVLKSLVPSiH------KVDKASILAETIAYLKELQ 422 5799***********************66......******************9 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF14215 | 2.7E-48 | 18 | 188 | IPR025610 | Transcription factor MYC/MYB N-terminal |
PROSITE profile | PS50888 | 16.19 | 372 | 421 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 1.56E-16 | 375 | 426 | No hit | No description |
SuperFamily | SSF47459 | 2.09E-18 | 376 | 440 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 4.3E-17 | 376 | 433 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 8.3E-11 | 376 | 422 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 2.4E-16 | 378 | 427 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0010026 | Biological Process | trichome differentiation | ||||
GO:0010214 | Biological Process | seed coat development | ||||
GO:2000029 | Biological Process | regulation of proanthocyanidin biosynthetic process | ||||
GO:0000976 | Molecular Function | transcription regulatory region sequence-specific DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 569 aa Download sequence Send to blast |
MALPASPVQE ELQPESQLRN HLAAAVRSIN WTYALFWSIS STQPGFLTWT DGFYNGEVKT 60 RKIANSAELT ADQLVMQRSE QLRELYEALL SGECDRRTAR PVASLSPEDL GDTEWYYVVC 120 MTYAFRPGQG LPGRSFASNE RVWMRNSHLA DSKAFPRALL AKSASIQTIV CIPFMSGVLE 180 LGTTDAVCSM VNRATASFWE MQFPACSQEP SSSPSANETG KPADIIVFED LDHIAMEAMI 240 AGGQELGEAE SLSDGTLEQI TKEIDEFYSL CEEMDVQPLE DTWIMDGSFE VPSSPQPAPG 300 PATTNAAATS SALVDGSRAT SFTAWARPES DSDEVAVPVV EEPQKLLKKA VAGGAWAANN 360 GGGGTTRMAQ ESGVKNHVMS ERKRREKLNE MFLVLKSLVP SIHKVDKASI LAETIAYLKE 420 LQRRVQELES SREPIISRPS ETTRATRRHD DEAVRKKVCA AGSKRKGSEL GGDVEREHPR 480 ALSKDGTSNV TVTVSDKEVL VEVQCRWEEL LMTRVFDAIK SLQLDVHSVQ ASAPDGFMGL 540 KIRAQFAGSA AVVPWMISEA LRNAIGKR* |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5t0f_A | 8e-20 | 15 | 187 | 6 | 178 | Transcription factor MYC3 |
5t0q_A | 8e-20 | 15 | 187 | 6 | 178 | Transcription factor MYC3 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
---|---|---|---|
No. | Start | End | Sequence |
1 | 380 | 385 | ERKRRE |
2 | 381 | 386 | RKRREK |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Putative transcriptional activator. Control tissue-specific synthesis of anthocyanin pigments in various parts of the maize plant. |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | Seita.7G195400.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_022683893.1 | 0.0 | anthocyanin regulatory R-S protein | ||||
Swissprot | P13526 | 0.0 | ARLC_MAIZE; Anthocyanin regulatory Lc protein | ||||
TrEMBL | A0A368RXM0 | 0.0 | A0A368RXM0_SETIT; Uncharacterized protein | ||||
STRING | Si000845m | 0.0 | (Setaria italica) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP932 | 33 | 109 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT5G41315.1 | 2e-63 | bHLH family protein |
Link Out ? help Back to Top | |
---|---|
Phytozome | Seita.7G195400.1.p |
Publications ? help Back to Top | |||
---|---|---|---|
|