PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Seita.7G191200.1.p
Common NameSETIT_012008mg
Organism
Setaria italica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
Family C2H2
Protein Properties Length: 581aa    MW: 60922.2 Da    PI: 6.7487
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Seita.7G191200.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H214.97.9e-0597114219
                         EETTTTEEESSHHHHHHH CS
             zf-C2H2   2 kCpdCgksFsrksnLkrH 19 
                         +C++Cgk F++++++ +H
  Seita.7G191200.1.p  97 VCKNCGKEFTSWELFLQH 114
                         7****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576672.19E-51642No hitNo description
SMARTSM003550.961941IPR015880Zinc finger, C2H2-like
PROSITE profilePS501579.9721946IPR007087Zinc finger, C2H2
PfamPF139120.00212041IPR007087Zinc finger, C2H2
PROSITE patternPS0002802141IPR007087Zinc finger, C2H2
SMARTSM0035526096116IPR015880Zinc finger, C2H2-like
PfamPF139121.4E-9265290IPR007087Zinc finger, C2H2
SuperFamilySSF576674.76E-8265288No hitNo description
SMARTSM003550.13266288IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.221266293IPR007087Zinc finger, C2H2
PROSITE patternPS000280268288IPR007087Zinc finger, C2H2
SuperFamilySSF576674.76E-8381408No hitNo description
SMARTSM003553.7386408IPR015880Zinc finger, C2H2-like
PfamPF139124.9E-11386409IPR007087Zinc finger, C2H2
PROSITE profilePS501579.182386408IPR007087Zinc finger, C2H2
PROSITE patternPS000280388408IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 581 aa     Download sequence    Send to blast
MPPSPSPPRP PGQPPEYKHF CRVCNKGFTC GSALGGHMRA HGASDADGFG ADDDSLGDEA  60
SARCRASEDR WDAVGTSATH AYALRANPNR LIRSCQVCKN CGKEFTSWEL FLQHGKCNSE  120
DEGEELADGW GSMRSSSPPS DADGEEDPAV ATAWSKGKRS RRVKLMIGGE DHSSVVPSRR  180
DTSREEEDLA NCLVMLSSSN VKQPTVVVET GQEEPCASAA KEGDGGPPLQ LQPISFFVPA  240
SEPVVALPSA VAVTPQYISP ASRNVFECKA CKKVFTSHQA LGGHRASHKK VKGCFAAKFE  300
SKANEPTRLL VTGDPNNVTG KRATVDETNA GVSTDAKASV YTATTNADTN AGTSEAAASL  360
SMAIGHNPPV TMLTTASSCK KNTKMHECSV CHRLFTSGQA LGGHKRCHWL TSSTADPCNT  420
VANMIPPLTE DLVGVVRHQL SLRPMVDAPE PVLDLTMAAI PSGLAAATAR PEAGGNSFRL  480
DALAPVHLQP LAVAVPSTAS HRKKTTATSS HHGIDTVAEE DEADSTTAKR AKLSDLKDVV  540
SMDGEPTGPW LQVGIGGSSS AGALFSLSTS SVVLGRLHIA *
Cis-element ? help Back to Top
SourceLink
PlantRegMapSeita.7G191200.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004978170.10.0uncharacterized protein LOC101762393
TrEMBLA0A368RXD90.0A0A368RXD9_SETIT; Uncharacterized protein
STRINGSi012008m0.0(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP35243262
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G35280.16e-20C2H2-like zinc finger protein