PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Seita.7G184400.1.p
Organism
Setaria italica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
Family Trihelix
Protein Properties Length: 371aa    MW: 39749.1 Da    PI: 7.2391
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Seita.7G184400.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix993.9e-3192176187
            trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqlea 87 
                         rW+++e++aLi++r+em+ ++r++ lk+plWe+vs+k+++ g++rs+k+Ckek+en++k+yk++keg+ +r++++s  +++fd+lea
  Seita.7G184400.1.p  92 RWPREETQALIRIRSEMDATFRDATLKGPLWEDVSRKLADLGYKRSAKKCKEKFENVHKYYKRTKEGRAGRQDGKS--YRFFDELEA 176
                         8*********************************************************************866665..******985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS500907.53885149IPR017877Myb-like domain
SMARTSM007171.9E-489151IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.603.1E-490149IPR009057Homeodomain-like
PfamPF138372.0E-2291177No hitNo description
CDDcd122038.51E-3091156No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 371 aa     Download sequence    Send to blast
MQQQQHQDGG GSQYGAAPPD MGPFSPPAAS GPMPLSSRPP SATQPPPQQQ QQQPRVTYEE  60
LAAVSGAGAG GFDDEMLGGS GGGGSSGASS NRWPREETQA LIRIRSEMDA TFRDATLKGP  120
LWEDVSRKLA DLGYKRSAKK CKEKFENVHK YYKRTKEGRA GRQDGKSYRF FDELEALHAA  180
APQPQPQQQL PPASSAQPLH AFAVPVSAPP PMSSMPPPPP GPMQPAPISS AGPAPVPAAA  240
PMELPPAQQP LNLQGLSFSS MSDSESDDES EDDDMTAETG GSQDHLGKRK RGGGAGGSKK  300
MMSFFEGLMQ QVVQRQEEMQ HRFLETMEKR EAERTAREEA WRSRRSPAST ASRSSSLRSA  360
PPRHPGTPPS *
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1134142KRSAKKCKE
Cis-element ? help Back to Top
SourceLink
PlantRegMapSeita.7G184400.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001146293.21e-132uncharacterized LOC100279868 isoform 1
TrEMBLA0A368RXB90.0A0A368RXB9_SETIT; Uncharacterized protein
STRINGGRMZM2G016649_P031e-130(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP60638175
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G33240.11e-42GT-2-like 1